Proton Pump Inhibitor Usage and the Risk of Myocardial Infarction in the General Population von Shah, Nigam H, LePendu, Paea, Bauer-Mehren, Anna, Ghebremariam, Yohannes T, Iyer, Srinivasan V, Marcus, Jake, Nead, Kevin T, Cooke, John P, Leeper, Nicholas J

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Mining clinical text for signals of adverse drug-drug interactions von Iyer, Srinivasan V, Harpaz, Rave, LePendu, Paea, Bauer-Mehren, Anna, Shah, Nigam H

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Toward personalizing treatment for depression: predicting diagnosis and severity von Huang, Sandy H, LePendu, Paea, Iyer, Srinivasan V, Tai-Seale, Ming, Carrell, David, Shah, Nigam H

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Practice-based evidence: profiling the safety of cilostazol by text-mining of clinical notes von Leeper, Nicholas J, Bauer-Mehren, Anna, Iyer, Srinivasan V, Lependu, Paea, Olson, Cliff, Shah, Nigam H

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Automated detection of off-label drug use von Jung, Kenneth, LePendu, Paea, Chen, William S, Iyer, Srinivasan V, Readhead, Ben, Dudley, Joel T, Shah, Nigam H

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NCBO Resource Index: Ontology-based search and mining of biomedical resources von Jonquet, Clement, LePendu, Paea, Falconer, Sean, Coulet, Adrien, Noy, Natalya F., Musen, Mark A., Shah, Nigam H.

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Performance of Pharmacovigilance Signal-Detection Algorithms for the FDA Adverse Event Reporting System von Harpaz, R, DuMouchel, W, LePendu, P, Bauer-Mehren, A, Ryan, P, Shah, N H

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Text Mining for Adverse Drug Events: the Promise, Challenges, and State of the Art von Harpaz, Rave, Callahan, Alison, Tamang, Suzanne, Low, Yen, Odgers, David, Finlayson, Sam, Jung, Kenneth, LePendu, Paea, Shah, Nigam H.

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Unexpected Effect of Proton Pump Inhibitors: Elevation of the Cardiovascular Risk Factor Asymmetric Dimethylarginine von Ghebremariam, Yohannes T., LePendu, Paea, Lee, Jerry C., Erlanson, Daniel A., Slaviero, Anna, Shah, Nigam H., Leiper, James, Cooke, John P.

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Building the graph of medicine from millions of clinical narratives von Finlayson, Samuel G., LePendu, Paea, Shah, Nigam H.

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Using ontology databases for scalable query answering, inconsistency detection, and data integration von LePendu, Paea, Dou, Dejing

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Functional evaluation of out-of-the-box text-mining tools for data-mining tasks von Jung, Kenneth, LePendu, Paea, Iyer, Srinivasan, Bauer-Mehren, Anna, Percha, Bethany, Shah, Nigam H

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Identifying phenotypic signatures of neuropsychiatric disorders from electronic medical records von Lyalina, Svetlana, Percha, Bethany, LePendu, Paea, Iyer, Srinivasan V, Altman, Russ B, Shah, Nigam H

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Enabling enrichment analysis with the Human Disease Ontology von LePendu, Paea, Musen, Mark A., Shah, Nigam H.

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Annotation Analysis for Testing Drug Safety Signals using Unstructured Clinical Notes von Lependu, Paea, Iyer, Srinivasan V, Fairon, Cédrick, Shah, Nigam H

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Development of Neural Electromagnetic Ontologies (NEMO): Ontology-based Tools for Representation and Integration of Event-related Brain Potentials von Frishkoff, Gwen, LePendu, Paea, Frank, Robert, Liu, Haishan, Dou, Dejing

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Using ontology-based annotation to profile disease research von Liu, Yi, Coulet, Adrien, LePendu, Paea, Shah, Nigam H

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Response to Letters Regarding Article, “Unexpected Effect of Proton Pump Inhibitors: Elevation of the Cardiovascular Risk Factor Asymmetric Dimethylarginine” von Ghebremariam, Yohannes T, LePendu, Paea, Lee, Jerry C, Erlanson, Daniel A, Slaviero, Anna, Shah, Nigam H, Leiper, James M, Cooke, John P

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Proton Pump Inhibitors and Cardiovascular Risk von Ghebremariam, Yohannes T., LePendu, Paea, Lee, Jerry C., Erlanson, Daniel A., Slaviero, Anna, Shah, Nigam H., Leiper, James M., Cooke, John P.

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Cross-domain targeted ontology subsets for annotation: The case of SNOMED CORE and RxNorm von López-García, Pablo, LePendu, Paea, Musen, Mark, Illarramendi, Arantza

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