Inferring gene regulatory networks from single-cell gene expression data via deep multi-view contrastive learning von Lin, Zerun, Ou-Yang, Le

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Clustering single-cell multi-omics data via graph regularized multi-view ensemble learning von Chen, Fuqun, Zou, Guanhua, Wu, Yongxian, Ou-Yang, Le

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Incorporating prior information into differential network analysis using non-paranormal graphical models von Zhang, Xiao-Fei, Ou-Yang, Le, Yan, Hong

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Equivariant Line Graph Neural Network for Protein-Ligand Binding Affinity Prediction von Yi, Yiqiang, Wan, Xu, Zhao, Kangfei, Ou-Yang, Le, Zhao, Peilin

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A graph regularized generalized matrix factorization model for predicting links in biomedical bipartite networks von Zhang, Zi-Chao, Zhang, Xiao-Fei, Wu, Min, Ou-Yang, Le, Zhao, Xing-Ming, Li, Xiao-Li

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DEMOC: a deep embedded multi-omics learning approach for clustering single-cell CITE-seq data von Zou, Guanhua, Lin, Yilong, Han, Tianyang, Ou-Yang, Le

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Sparse regularized low-rank tensor regression with applications in genomic data analysis von Ou-Yang, Le, Zhang, Xiao-Fei, Yan, Hong

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MARS: a motif-based autoregressive model for retrosynthesis prediction von Liu, Jiahan, Yan, Chaochao, Yu, Yang, Lu, Chan, Huang, Junzhou, Ou-Yang, Le, Zhao, Peilin

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Self-representative kernel concept factorization von Wu, Wenhui, Chen, Yujie, Wang, Ran, Ou-Yang, Le

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EnImpute: imputing dropout events in single-cell RNA-sequencing data via ensemble learning von Zhang, Xiao-Fei, Ou-Yang, Le, Yang, Shuo, Zhao, Xing-Ming, Hu, Xiaohua, Yan, Hong

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DiffNetFDR: differential network analysis with false discovery rate control von Zhang, Xiao-Fei, Ou-Yang, Le, Yang, Shuo, Hu, Xiaohua, Yan, Hong

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Recent advances in network-based methods for disease gene prediction von Ata, Sezin Kircali, Wu, Min, Fang, Yuan, Ou-Yang, Le, Kwoh, Chee Keong, Li, Xiao-Li

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RepLong: de novo repeat identification using long read sequencing data von Guo, Rui, Li, Yan-Ran, He, Shan, Ou-Yang, Le, Sun, Yiwen, Zhu, Zexuan

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Differential network analysis by simultaneously considering changes in gene interactions and gene expression von Tu, Jia-Juan, Ou-Yang, Le, Zhu, Yuan, Yan, Hong, Qin, Hong, Zhang, Xiao-Fei

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Determining minimum set of driver nodes in protein-protein interaction networks von Zhang, Xiao-Fei, Ou-Yang, Le, Zhu, Yuan, Wu, Meng-Yun, Dai, Dao-Qing

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A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks von Ou-Yang, Le, Yan, Hong, Zhang, Xiao-Fei

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Predicting the impacts of mutations on protein-ligand binding affinity based on molecular dynamics simulations and machine learning methods von Wang, Debby D., Ou-Yang, Le, Xie, Haoran, Zhu, Mengxu, Yan, Hong

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Differential network analysis from cross-platform gene expression data von Zhang, Xiao-Fei, Ou-Yang, Le, Zhao, Xing-Ming, Yan, Hong

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WDNE: an integrative graphical model for inferring differential networks from multi-platform gene expression data with missing values von Le Ou-Yang, Cai, Dehan, Zhang, Xiao-Fei, Hong Yan

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