High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development von Daccord, Nicolas, Celton, Jean-Marc, Linsmith, Gareth, Becker, Claude, Choisne, Nathalie, Schijlen, Elio, van de Geest, Henri, Bianco, Luca, Micheletti, Diego, Velasco, Riccardo, Di Pierro, Erica Adele, Gouzy, Jérôme, Rees, D Jasper G, Guérif, Philippe, Muranty, Hélène, Durel, Charles-Eric, Laurens, François, Lespinasse, Yves, Gaillard, Sylvain, Aubourg, Sébastien, Quesneville, Hadi, Weigel, Detlef, van de Weg, Eric, Troggio, Michela, Bucher, Etienne

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Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm von Muranty, Hélène, Denancé, Caroline, Feugey, Laurence, Crépin, Jean-Luc, Barbier, Yves, Tartarini, Stefano, Ordidge, Matthew, Troggio, Michela, Lateur, Marc, Nybom, Hilde, Paprstein, Frantisek, Laurens, François, Durel, Charles-Eric

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Development and validation of the Axiom®Apple480K SNP genotyping array von Bianco, Luca, Cestaro, Alessandro, Linsmith, Gareth, Muranty, Hélène, Denancé, Caroline, Théron, Anthony, Poncet, Charles, Micheletti, Diego, Kerschbamer, Emanuela, Di Pierro, Erica A., Larger, Simone, Pindo, Massimo, Van de Weg, Eric, Davassi, Alessandro, Laurens, François, Velasco, Riccardo, Durel, Charles‐Eric, Troggio, Michela

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New insight into the history of domesticated apple: secondary contribution of the European wild apple to the genome of cultivated varieties von Cornille, Amandine, Gladieux, Pierre, Smulders, Marinus J M, Roldán-Ruiz, Isabel, Laurens, François, Le Cam, Bruno, Nersesyan, Anush, Clavel, Joanne, Olonova, Marina, Feugey, Laurence, Gabrielyan, Ivan, Zhang, Xiu-Guo, Tenaillon, Maud I, Giraud, Tatiana

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Detecting QTLs and putative candidate genes involved in budbreak and flowering time in an apple multiparental population von Allard, Alix, Bink, Marco C.A.M., Martinez, Sébastien, Kelner, Jean-Jacques, Legave, Jean-Michel, di Guardo, Mario, Di Pierro, Erica A., Laurens, François, van de Weg, Eric W., Costes, Evelyne

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Analysis of the genetic diversity and structure across a wide range of germplasm reveals prominent gene flow in apple at the European level von Urrestarazu, Jorge, Denancé, Caroline, Ravon, Elisa, Guyader, Arnaud, Guisnel, Rémi, Feugey, Laurence, Poncet, Charles, Lateur, Marc, Houben, Patrick, Ordidge, Matthew, Fernandez-Fernandez, Felicidad, Evans, Kate M, Paprstein, Frantisek, Sedlak, Jiri, Nybom, Hilde, Garkava-Gustavsson, Larisa, Miranda, Carlos, Gassmann, Jennifer, Kellerhals, Markus, Suprun, Ivan, Pikunova, Anna V, Krasova, Nina G, Torutaeva, Elnura, Dondini, Luca, Tartarini, Stefano, Laurens, François, Durel, Charles-Eric

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Integrated QTL detection for key breeding traits in multiple peach progenies von Hernández Mora, José R, Micheletti, Diego, Bink, Marco, Van de Weg, Eric, Cantín, Celia, Nazzicari, Nelson, Caprera, Andrea, Dettori, Maria Teresa, Micali, Sabrina, Banchi, Elisa, Campoy, José Antonio, Dirlewanger, Elisabeth, Lambert, Patrick, Pascal, Thierry, Troggio, Michela, Bassi, Daniele, Rossini, Laura, Verde, Ignazio, Quilot-Turion, Bénédicte, Laurens, François, Arús, Pere, Aranzana, Maria José

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Whole-Genome Analysis of Diversity and SNP-Major Gene Association in Peach Germplasm von Micheletti, Diego, Dettori, Maria Teresa, Micali, Sabrina, Aramini, Valeria, Pacheco, Igor, Da Silva Linge, Cassia, Foschi, Stefano, Banchi, Elisa, Barreneche, Teresa, Quilot-Turion, Bénédicte, Lambert, Patrick, Pascal, Thierry, Iglesias, Ignasi, Carbó, Joaquim, Wang, Li-Rong, Ma, Rui-Juan, Li, Xiong-Wei, Gao, Zhong-Shan, Nazzicari, Nelson, Troggio, Michela, Bassi, Daniele, Rossini, Laura, Verde, Ignazio, Laurens, François, Arús, Pere, Aranzana, Maria José

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Epistatic fire blight resistance QTL alleles in the apple cultivar ‘Enterprise’ and selection X-6398 discovered and characterized through pedigree-informed analysis von van de Weg, Eric, Di Guardo, Mario, Jänsch, Melanie, Socquet-Juglard, Didier, Costa, Fabrizio, Baumgartner, Isabelle, Broggini, Giovanni A. L., Kellerhals, Markus, Troggio, Michela, Laurens, François, Durel, Charles-Eric, Patocchi, Andrea

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Systems-Based Approaches to Unravel Networks and Individual Elements Involved in Apple Superficial Scald von Karagiannis, Evangelos, Tanou, Georgia, Scossa, Federico, Samiotaki, Martina, Michailidis, Michail, Manioudaki, Maria, Laurens, François, Job, Dominique, Fernie, Alisdair R, Orsel, Mathilde, Molassiotis, Athanassios

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Genome-Wide Association Mapping of Flowering and Ripening Periods in Apple von Urrestarazu, Jorge, Muranty, Hélène, Denancé, Caroline, Leforestier, Diane, Ravon, Elisa, Guyader, Arnaud, Guisnel, Rémi, Feugey, Laurence, Aubourg, Sébastien, Celton, Jean-Marc, Daccord, Nicolas, Dondini, Luca, Gregori, Roberto, Lateur, Marc, Houben, Patrick, Ordidge, Matthew, Paprstein, Frantisek, Sedlak, Jiri, Nybom, Hilde, Garkava-Gustavsson, Larisa, Troggio, Michela, Bianco, Luca, Velasco, Riccardo, Poncet, Charles, Théron, Anthony, Moriya, Shigeki, Bink, Marco C A M, Laurens, François, Tartarini, Stefano, Durel, Charles-Eric

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Skin Color in Apple Fruit ( Malus × domestica ): Genetic and Epigenetic Insights von Wang, Wuqian, Celton, Jean-Marc, Buck-Sorlin, Gerhard, Balzergue, Sandrine, Bucher, Etienne, Laurens, François

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Widespread anti‐sense transcription in apple is correlated with siRNA production and indicates a large potential for transcriptional and/or post‐transcriptional control von Celton, Jean‐Marc, Gaillard, Sylvain, Bruneau, Maryline, Pelletier, Sandra, Aubourg, Sébastien, Martin‐Magniette, Marie‐Laure, Navarro, Lionel, Laurens, François, Renou, Jean‐Pierre

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Contrasting Transcriptional Programs Control Postharvest Development of Apples (Malus x domestica Borkh.) Submitted to Cold Storage and Ethylene Blockage von Storch, Tatiane Timm, Finatto, Taciane, Bruneau, Maryline, Orsel-Baldwin, Mathilde, Renou, Jean-Pierre, Rombaldi, Cesar Valmor, Quecini, Vera, Laurens, François, Girardi, César Luis

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QTL analysis and candidate gene mapping for the polyphenol content in cider apple von Verdu, Cindy F, Guyot, Sylvain, Childebrand, Nicolas, Bahut, Muriel, Celton, Jean-Marc, Gaillard, Sylvain, Lasserre-Zuber, Pauline, Troggio, Michela, Guilet, David, Laurens, François

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Comparison of two methods, UHPLC-UV and UHPLC-MS/MS, for the quantification of polyphenols in cider apple juices von Verdu, Cindy F, Gatto, Julia, Freuze, Ingrid, Richomme, Pascal, Laurens, François, Guilet, David

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Combining genetic resources and elite material populations to improve the accuracy of genomic prediction in apple von Cazenave, Xabi, Petit, Bernard, Lateur, Marc, Nybom, Hilde, Sedlak, Jiri, Tartarini, Stefano, Laurens, François, Durel, Charles-Eric, Muranty, Hélène

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Development of SNP-based assays for disease resistance and fruit quality traits in apple (Malus × domestica Borkh.) and validation in breeding pilot studies von Baumgartner, Isabelle O., Kellerhals, Markus, Costa, Fabrizio, Dondini, Luca, Pagliarani, Giulia, Gregori, Roberto, Tartarini, Stefano, Leumann, Lucie, Laurens, François, Patocchi, Andrea

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The apple REFPOP—a reference population for genomics-assisted breeding in apple von Jung, Michaela, Roth, Morgane, Aranzana, Maria José, Auwerkerken, Annemarie, Bink, Marco, Denancé, Caroline, Dujak, Christian, Durel, Charles-Eric, Font i Forcada, Carolina, Cantin, Celia M., Guerra, Walter, Howard, Nicholas P., Keller, Beat, Lewandowski, Mariusz, Ordidge, Matthew, Rymenants, Marijn, Sanin, Nadia, Studer, Bruno, Zurawicz, Edward, Laurens, François, Patocchi, Andrea, Muranty, Hélène

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Genome-wide analysis of the AP2/ERF superfamily in apple and transcriptional evidence of ERF involvement in scab pathogenesis von Girardi, César Luís, Rombaldi, César Valmor, Dal Cero, Joceani, Nobile, Paula M., Laurens, François, Bouzayen, Mondher, Quecini, Vera

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