Immunogenicity and efficacy of          heterologous ChAdOx1–BNT162b2 vaccination von Pozzetto, Bruno, Legros, Vincent, Djebali, Sophia, Barateau, Véronique, Guibert, Nicolas, Villard, Marine, Peyrot, Loïc, Allatif, Omran, Fassier, Jean-Baptiste, Massardier-Pilonchéry, Amélie, Brengel-Pesce, Karen, Yaugel-Novoa, Melyssa, Denolly, Solène, Boson, Bertrand, Bourlet, Thomas, Bal, Antonin, Valette, Martine, Andrieu, Thibault, Lina, Bruno, Cosset, François-Loïc, Paul, Stéphane, Defrance, Thierry, Marvel, Jacqueline, Walzer, Thierry, Trouillet-Assant, Sophie

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Systematic SARS-CoV-2 screening in cerebrospinal fluid during the COVID-19 pandemic von Destras, Grégory, Bal, Antonin, Escuret, Vanessa, Morfin, Florence, Lina, Bruno, Josset, Laurence

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Molecular diversity and biennial circulation of enterovirus D68: a systematic screening study in Lyon, France, 2010 to 2016 von Kramer, Rolf, Sabatier, Marina, Wirth, Thierry, Pichon, Maxime, Lina, Bruno, Schuffenecker, Isabelle, Josset, Laurence

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Attenuation and restoration of severe acute respiratory syndrome coronavirus mutant lacking 2'-o-methyltransferase activity von Menachery, Vineet D, Yount, Jr, Boyd L, Josset, Laurence, Gralinski, Lisa E, Scobey, Trevor, Agnihothram, Sudhakar, Katze, Michael G, Baric, Ralph S

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Evidence of co-infections during Delta and Omicron SARS-CoV-2 variants co-circulation through prospective screening and sequencing von Combes, Patricia, Bisseux, Maxime, Bal, Antonin, Marin, Pierre, Latour, Justine, Archimbaud, Christine, Brebion, Amélie, Chabrolles, Hélène, Regagnon, Christel, Lafolie, Jérémy, Destras, Gregory, Simon, Bruno, Izopet, Jacques, Laurence Josset, Henquell, Cécile, Mirand, Audrey

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Detection and prevalence of SARS-CoV-2 co-infections during the Omicron variant circulation in France von Bal, Antonin, Simon, Bruno, Destras, Gregory, Chalvignac, Richard, Semanas, Quentin, Oblette, Antoine, Quéromès, Grégory, Fanget, Remi, Regue, Hadrien, Morfin, Florence, Valette, Martine, Lina, Bruno, Josset, Laurence

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Simultaneous co-infection with Omicron (B.1.1.529) and Delta (21A/478K.V1) SARS-CoV-2 variants confirmed by whole genome sequencing von Zayet, Souheil, Vuillemenot, Jean-Baptiste, Josset, Laurence, Gendrin, Vincent, Klopfenstein, Timothée

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Cell host response to infection with novel human coronavirus EMC predicts potential antivirals and important differences with SARS coronavirus von Josset, Laurence, Menachery, Vineet D, Gralinski, Lisa E, Agnihothram, Sudhakar, Sova, Pavel, Carter, Victoria S, Yount, Boyd L, Graham, Rachel L, Baric, Ralph S, Katze, Michael G

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Co-infection with Legionella and SARS-CoV-2, France, March 2020 von Allam, Camille, Gaymard, Alexandre, Descours, Ghislaine, Ginevra, Christophe, Josset, Laurence, Bouscambert, Maud, Beraud, Laetitia, Ibranosyan, Marine, Golfier, Camille, Friggeri, Arnaud, Lina, Bruno, Campese, Christine, Ader, Florence, Jarraud, Sophie

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Novel SARS-CoV-2 Variant Derived from Clade 19B, France von Fourati, Slim, Decousser, Jean-Winoc, Khouider, Souraya, N'Debi, Melissa, Demontant, Vanessa, Trawinski, Elisabeth, Gourgeon, Aurelie, Gangloff, Christine, Destras, Gregory, Bal, Antonin, Josset, Laurence, Soulier, Alexandre, Costa, Yannick, Gricourt, Guillaume, Lina, Bruno, Lepeule, Raphael, Pawlotsky, Jean-Michel, Rodriguez, Christophe

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Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses von Menachery, Vineet D, Eisfeld, Amie J, Schäfer, Alexandra, Josset, Laurence, Sims, Amy C, Proll, Sean, Fan, Shufang, Li, Chengjun, Neumann, Gabriele, Tilton, Susan C, Chang, Jean, Gralinski, Lisa E, Long, Casey, Green, Richard, Williams, Christopher M, Weiss, Jeffrey, Matzke, Melissa M, Webb-Robertson, Bobbie-Jo, Schepmoes, Athena A, Shukla, Anil K, Metz, Thomas O, Smith, Richard D, Waters, Katrina M, Katze, Michael G, Kawaoka, Yoshihiro, Baric, Ralph S

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Whole Genome Sequencing of A(H3N2) Influenza Viruses Reveals Variants Associated with Severity during the 2016⁻2017 Season von Simon, Bruno, Pichon, Maxime, Valette, Martine, Burfin, Gwendolyne, Richard, Mathilde, Lina, Bruno, Josset, Laurence

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Emergence of enterovirus D68 clade D1, France, August to November 2018 von Bal, Antonin, Sabatier, Marina, Wirth, Thierry, Coste-Burel, Marianne, Lazrek, Mouna, Stefic, Karl, Brengel-Pesce, Karen, Morfin, Florence, Lina, Bruno, Schuffenecker, Isabelle, Josset, Laurence

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Impact of the Respiratory Microbiome on Host Responses to Respiratory Viral Infection von Pichon, Maxime, Lina, Bruno, Josset, Laurence

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Characterization of SARS-CoV-2 ORF6 deletion variants detected in a nosocomial cluster during routine genomic surveillance, Lyon, France von Quéromès, Grégory, Destras, Grégory, Bal, Antonin, Regue, Hadrien, Burfin, Gwendolyne, Brun, Solenne, Fanget, Rémi, Morfin, Florence, Valette, Martine, Trouillet-Assant, Sophie, Lina, Bruno, Frobert, Emilie, Josset, Laurence

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Pathophysiologic and transcriptomic analyses of viscerotropic yellow fever in a rhesus macaque model von Engelmann, Flora, Josset, Laurence, Girke, Thomas, Park, Byung, Barron, Alex, Dewane, Jesse, Hammarlund, Erika, Lewis, Anne, Axthelm, Michael K, Slifka, Mark K, Messaoudi, Ilhem

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The 1918 Influenza Virus PB2 Protein Enhances Virulence through the Disruption of Inflammatory and Wnt-Mediated Signaling in Mice von Forero, Adriana, Tisoncik-Go, Jennifer, Watanabe, Tokiko, Zhong, Gongxun, Hatta, Masato, Tchitchek, Nicolas, Selinger, Christian, Chang, Jean, Barker, Kristi, Morrison, Juliet, Berndt, Jason D, Moon, Randall T, Josset, Laurence, Kawaoka, Yoshihiro, Katze, Michael G

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Catching SARS-CoV-2 by Sequence Hybridization: a Comparative Analysis von Rehn, Alexandra, Braun, Peter, Knuepfer, Mandy, Woelfel, Roman, Antwerpen, Markus H., Walter, Mathias C.

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Metagenomic Analysis Reveals High Abundance of Torque Teno Mini Virus in the Respiratory Tract of Children with Acute Respiratory Illness von Bal, Antonin, Destras, Gregory, Sabatier, Marina, Pichon, Maxime, Regue, Hadrien, Oriol, Guy, Gillet, Yves, Lina, Bruno, Brengel-Pesce, Karen, Josset, Laurence, Morfin, Florence

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Increased Viral Loads and Exacerbated Innate Host Responses in Aged Macaques Infected with the 2009 Pandemic H1N1 Influenza A Virus von JOSSET, Laurence, ENGELMANN, Flora, HABERTHUR, Kristen, KELLY, Sara, PARK, Byung, KAWOAKA, Yoshi, GARCIA-SASTRE, Adolfo, KATZE, Michael G, MESSAOUDI, Ilhem

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