Enhancing CRISPR-Cas9 gRNA efficiency prediction by data integration and deep learning von Xiang, Xi, Corsi, Giulia I., Anthon, Christian, Qu, Kunli, Pan, Xiaoguang, Liang, Xue, Han, Peng, Dong, Zhanying, Liu, Lijun, Zhong, Jiayan, Ma, Tao, Wang, Jinbao, Zhang, Xiuqing, Jiang, Hui, Xu, Fengping, Liu, Xin, Xu, Xun, Wang, Jian, Yang, Huanming, Bolund, Lars, Church, George M., Lin, Lin, Gorodkin, Jan, Luo, Yonglun

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WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update von Ye, Jia, Zhang, Yong, Cui, Huihai, Liu, Jiawei, Wu, Yuqing, Cheng, Yun, Xu, Huixing, Huang, Xingxin, Li, Shengting, Zhou, An, Zhang, Xiuqing, Bolund, Lars, Chen, Qiang, Wang, Jian, Yang, Huanming, Fang, Lin, Shi, Chunmei

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An atlas of the protein-coding genes in the human, pig, and mouse brain von Sjöstedt, Evelina, Zhong, Wen, Fagerberg, Linn, Karlsson, Max, Mitsios, Nicholas, Adori, Csaba, Oksvold, Per, Edfors, Fredrik, Limiszewska, Agnieszka, Hikmet, Feria, Huang, Jinrong, Du, Yutao, Lin, Lin, Dong, Zhanying, Yang, Ling, Liu, Xin, Jiang, Hui, Xu, Xun, Wang, Jian, Yang, Huanming, Bolund, Lars, Mardinoglu, Adil, Zhang, Cheng, von Feilitzen, Kalle, Lindskog, Cecilia, Pontén, Fredrik, Luo, Yonglun, Hökfelt, Tomas, Uhlén, Mathias, Mulder, Jan

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Single-Cell Transcriptome Atlas of Murine Endothelial Cells von Kalucka, Joanna, de Rooij, Laura P.M.H., Goveia, Jermaine, Rohlenova, Katerina, Dumas, Sébastien J., Meta, Elda, Conchinha, Nadine V., Taverna, Federico, Teuwen, Laure-Anne, Veys, Koen, García-Caballero, Melissa, Khan, Shawez, Geldhof, Vincent, Sokol, Liliana, Chen, Rongyuan, Treps, Lucas, Borri, Mila, de Zeeuw, Pauline, Dubois, Charlotte, Karakach, Tobias K., Falkenberg, Kim D., Parys, Magdalena, Yin, Xiangke, Vinckier, Stefan, Du, Yuxiang, Fenton, Robert A., Schoonjans, Luc, Dewerchin, Mieke, Eelen, Guy, Thienpont, Bernard, Lin, Lin, Bolund, Lars, Li, Xuri, Luo, Yonglun, Carmeliet, Peter

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Chromatin accessibility and guide sequence secondary structure affect CRISPR‐Cas9 gene editing efficiency von Jensen, Kristopher Torp, Fløe, Lasse, Petersen, Trine Skov, Huang, Jinrong, Xu, Fengping, Bolund, Lars, Luo, Yonglun, Lin, Lin

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Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis von Rohlenova, Katerina, Goveia, Jermaine, García-Caballero, Melissa, Subramanian, Abhishek, Kalucka, Joanna, Treps, Lucas, Falkenberg, Kim D., de Rooij, Laura P.M.H., Zheng, Yingfeng, Lin, Lin, Sokol, Liliana, Teuwen, Laure-Anne, Geldhof, Vincent, Taverna, Federico, Pircher, Andreas, Conradi, Lena-Christin, Khan, Shawez, Stegen, Steve, Panovska, Dena, De Smet, Frederik, Staal, Frank J.T., Mclaughlin, Rene J., Vinckier, Stefan, Van Bergen, Tine, Ectors, Nadine, De Haes, Patrik, Wang, Jian, Bolund, Lars, Schoonjans, Luc, Karakach, Tobias K., Yang, Huanming, Carmeliet, Geert, Liu, Yizhi, Thienpont, Bernard, Dewerchin, Mieke, Eelen, Guy, Li, Xuri, Luo, Yonglun, Carmeliet, Peter

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Single-Cell RNA Sequencing Reveals Renal Endothelium Heterogeneity and Metabolic Adaptation to Water Deprivation von Dumas, Sébastien J, Meta, Elda, Borri, Mila, Goveia, Jermaine, Rohlenova, Katerina, Conchinha, Nadine V, Falkenberg, Kim, Teuwen, Laure-Anne, de Rooij, Laura, Kalucka, Joanna, Chen, Rongyuan, Khan, Shawez, Taverna, Federico, Lu, Weisi, Parys, Magdalena, De Legher, Carla, Vinckier, Stefan, Karakach, Tobias K, Schoonjans, Luc, Lin, Lin, Bolund, Lars, Dewerchin, Mieke, Eelen, Guy, Rabelink, Ton J, Li, Xuri, Luo, Yonglun, Carmeliet, Peter

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Single-Cell Transcriptome Analysis of Uniparental Embryos Reveals Parent-of-Origin Effects on Human Preimplantation Development von Leng, Lizhi, Sun, Jiya, Huang, Jinrong, Gong, Fei, Yang, Ling, Zhang, Shuoping, Yuan, Xuye, Fang, Fang, Xu, Xun, Luo, Yonglun, Bolund, Lars, Peters, Brock A., Lu, Guangxiu, Jiang, Taijiao, Xu, Fengping, Lin, Ge

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Golden Gate Assembly of CRISPR gRNA expression array for simultaneously targeting multiple genes von Vad-Nielsen, Johan, Lin, Lin, Bolund, Lars, Nielsen, Anders Lade, Luo, Yonglun

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Single-Cell Exome Sequencing and Monoclonal Evolution of a JAK2-Negative Myeloproliferative Neoplasm von Hou, Yong, Song, Luting, Zhu, Ping, Zhang, Bo, Tao, Ye, Xu, Xun, Li, Fuqiang, Wu, Kui, Liang, Jie, Shao, Di, Wu, Hanjie, Ye, Xiaofei, Ye, Chen, Wu, Renhua, Jian, Min, Chen, Yan, Xie, Wei, Zhang, Ruren, Chen, Lei, Liu, Xin, Yao, Xiaotian, Zheng, Hancheng, Yu, Chang, Li, Qibin, Gong, Zhuolin, Mao, Mao, Yang, Xu, Yang, Lin, Li, Jingxiang, Wang, Wen, Lu, Zuhong, Gu, Ning, Laurie, Goodman, Bolund, Lars, Kristiansen, Karsten, Wang, Jian, Yang, Huanming, Li, Yingrui, Zhang, Xiuqing, Wang, Jun

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Mesenchymal stem cells derived from human induced pluripotent stem cells retain adequate osteogenicity and chondrogenicity but less adipogenicity von Kang, Ran, Zhou, Yan, Tan, Shuang, Zhou, Guangqian, Aagaard, Lars, Xie, Lin, Bünger, Cody, Bolund, Lars, Luo, Yonglun

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SOAPindel: efficient identification of indels from short paired reads von Li, Shengting, Li, Ruiqiang, Li, Heng, Lu, Jianliang, Li, Yingrui, Bolund, Lars, Schierup, Mikkel H, Wang, Jun

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Massively targeted evaluation of therapeutic CRISPR off-targets in cells von Pan, Xiaoguang, Qu, Kunli, Yuan, Hao, Xiang, Xi, Anthon, Christian, Pashkova, Liubov, Liang, Xue, Han, Peng, Corsi, Giulia I., Xu, Fengping, Liu, Ping, Zhong, Jiayan, Zhou, Yan, Ma, Tao, Jiang, Hui, Liu, Junnian, Wang, Jian, Jessen, Niels, Bolund, Lars, Yang, Huanming, Xu, Xun, Church, George M., Gorodkin, Jan, Lin, Lin, Luo, Yonglun

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The DNA methylome of human peripheral blood mononuclear cells von Li, Yingrui, Zhu, Jingde, Tian, Geng, Li, Ning, Li, Qibin, Ye, Mingzhi, Zheng, Hancheng, Yu, Jian, Wu, Honglong, Sun, Jihua, Zhang, Hongyu, Chen, Quan, Luo, Ruibang, Chen, Minfeng, He, Yinghua, Jin, Xin, Zhang, Qinghui, Yu, Chang, Zhou, Guangyu, Sun, Jinfeng, Huang, Yebo, Zheng, Huisong, Cao, Hongzhi, Zhou, Xiaoyu, Guo, Shicheng, Hu, Xueda, Li, Xin, Kristiansen, Karsten, Bolund, Lars, Xu, Jiujin, Wang, Wen, Yang, Huanming, Wang, Jian, Li, Ruiqiang, Beck, Stephan, Wang, Jun, Zhang, Xiuqing

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Integrative genetic and single cell RNA sequencing analysis provides new clues to the amyotrophic lateral sclerosis neurodegeneration von Liu, Hankui, Guan, Liping, Deng, Min, Bolund, Lars, Kristiansen, Karsten, Zhang, Jianguo, Luo, Yonglun, Zhang, Zhanchi

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BS-SNPer: SNP calling in bisulfite-seq data von Gao, Shengjie, Zou, Dan, Mao, Likai, Liu, Huayu, Song, Pengfei, Chen, Youguo, Zhao, Shancen, Gao, Changduo, Li, Xiangchun, Gao, Zhibo, Fang, Xiaodong, Yang, Huanming, Ørntoft, Torben F, Sørensen, Karina D, Bolund, Lars

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From gut to liver: unveiling the differences of intestinal microbiota in NAFL and NASH patients von Huang, Furong, Lyu, Bo, Xie, Fanci, Li, Fang, Xing, Yufeng, Han, Zhiyi, Lai, Jianping, Ma, Jinmin, Zou, Yuanqiang, Zeng, Hua, Xu, Zhe, Gao, Pan, Luo, Yonglun, Bolund, Lars, Tong, Guangdong, Fengping, Xu

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Comparison of In-Frame Deletion, Homology-Directed Repair, and Prime Editing-Based Correction of Duchenne Muscular Dystrophy Mutations von Zhao, Xiaoying, Qu, Kunli, Curci, Benedetta, Yang, Huanming, Bolund, Lars, Lin, Lin, Luo, Yonglun

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Building the sequence map of the human pan-genome von Zhu, Hongmei, Tian, Geng, Hu, Xueda, Li, Qibin, Cao, Hongzhi, Wang, Jian, Qian, Wubin, Bolund, Lars, Wu, Honglong, Li, Songgang, Li, Ruiqiang, Qin, Junjie, Kristiansen, Karsten, Li, Yingrui, Cann, Howard, Yang, Huanming, Wang, Jun, Zhu, Xuan, Zhang, Xiuqing, Jin, Xin, Blanche, Hélène, Luo, Ruibang, Ren, Yuanyuan, Li, Jinxiang, Zheng, Hancheng, Li, Dongfang, Zhou, Guangyu

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A simple method for deriving functional MSCs and applied for osteogenesis in 3D scaffolds von Zou, Lijin, Luo, Yonglun, Chen, Muwan, Wang, Gang, Ding, Ming, Petersen, Charlotte Christie, Kang, Ran, Dagnaes-Hansen, Frederik, Zeng, Yuanlin, Lv, Nonghua, Ma, Qing, Le, Dang Q. S., Besenbacher, Flemming, Bolund, Lars, Jensen, Thomas G., Kjems, Jørgen, Pu, William T., Bünger, Cody

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