Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression von Vining, Kelly J, Pomraning, Kyle R, Wilhelm, Larry J, Priest, Henry D, Pellegrini, Matteo, Mockler, Todd C, Freitag, Michael, Strauss, Steven H

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Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea von Sowell, Sarah M, Wilhelm, Larry J, Norbeck, Angela D, Lipton, Mary S, Nicora, Carrie D, Barofsky, Douglas F, Carlson, Craig A, Smith, Richard D, Giovanonni, Stephen J

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genome-wide view of Caenorhabditis elegans base-substitution mutation processes von Denver, Dee R, Dolan, Peter C, Wilhelm, Larry J, Sung, Way, Lucas-Lledó, J. Ignacio, Howe, Dana K, Lewis, Samantha C, Okamoto, Kazu, Thomas, W. Kelley, Lynch, Michael, Baer, Charles F

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Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa von Slavov, Gancho T., DiFazio, Stephen P., Martin, Joel, Schackwitz, Wendy, Muchero, Wellington, Rodgers‐Melnick, Eli, Lipphardt, Mindie F., Pennacchio, Christa P., Hellsten, Uffe, Pennacchio, Len A., Gunter, Lee E., Ranjan, Priya, Vining, Kelly, Pomraning, Kyle R., Wilhelm, Larry J., Pellegrini, Matteo, Mockler, Todd C., Freitag, Michael, Geraldes, Armando, El‐Kassaby, Yousry A., Mansfield, Shawn D., Cronk, Quentin C. B., Douglas, Carl J., Strauss, Steven H., Rokhsar, Dan, Tuskan, Gerald A.

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Cross-species epigenetic regulation of nucleus accumbens KCNN3 transcripts by excessive ethanol drinking von Mulholland, Patrick J., Padula, Audrey E., Wilhelm, Larry J., Park, Byung, Grant, Kathleen A., Ferguson, Betsy M., Cervera-Juanes, Rita

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Genome-Wide SNP Detection, Validation, and Development of an 8K SNP Array for Apple von Chagné, David, Crowhurst, Ross N, Troggio, Michela, Davey, Mark W, Gilmore, Barbara, Lawley, Cindy, Vanderzande, Stijn, Hellens, Roger P, Kumar, Satish, Cestaro, Alessandro, Velasco, Riccardo, Main, Dorrie, Rees, Jasper D, Iezzoni, Amy, Mockler, Todd, Wilhelm, Larry, Van de Weg, Eric, Gardiner, Susan E, Bassil, Nahla, Peace, Cameron, Bendahmane, Mohammed

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Genome-wide analysis of the nucleus accumbens identifies DNA methylation signals differentiating low/binge from heavy alcohol drinking von Cervera-Juanes, Rita, Wilhelm, Larry J, Park, Byung, Grant, Kathleen A, Ferguson, Betsy

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Host-Selective Toxins of Pyrenophora tritici-repentis Induce Common Responses Associated with Host Susceptibility von Pandelova, Iovanna, Figueroa, Melania, Wilhelm, Larry J, Manning, Viola A, Mankaney, Aakash N, Mockler, Todd C, Ciuffetti, Lynda M, Yun, Sung-Hwan

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Using mitogenomic and nuclear ribosomal sequence data to investigate the phylogeny of the Xiphinema americanum species complex von Zasada, Inga A, Peetz, Amy, Howe, Dana K, Wilhelm, Larry J, Cheam, Daravuth, Denver, Dee R, Smythe, Ashleigh B

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Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm von Verde, Ignazio, Bassil, Nahla, Scalabrin, Simone, Gilmore, Barbara, Lawley, Cynthia T, Gasic, Ksenija, Micheletti, Diego, Rosyara, Umesh R, Cattonaro, Federica, Vendramin, Elisa, Main, Dorrie, Aramini, Valeria, Blas, Andrea L, Mockler, Todd C, Bryant, Douglas W, Wilhelm, Larry, Troggio, Michela, Sosinski, Bryon, Aranzana, Maria José, Arús, Pere, Iezzoni, Amy, Morgante, Michele, Peace, Cameron, Wu, Rongling

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SAR11 marine bacteria require exogenous reduced sulphur for growth von Giovannoni, Stephen J, Tripp, H. James, Kitner, Joshua B, Schwalbach, Michael S, Dacey, John W. H, Wilhelm, Larry J

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GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences von Cumbie, Jason S, Kimbrel, Jeffrey A, Di, Yanming, Schafer, Daniel W, Wilhelm, Larry J, Fox, Samuel E, Sullivan, Christopher M, Curzon, Aron D, Carrington, James C, Mockler, Todd C, Chang, Jeff H

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Development and Evaluation of a Genome-Wide 6K SNP Array for Diploid Sweet Cherry and Tetraploid Sour Cherry von Peace, Cameron, Bassil, Nahla, Main, Dorrie, Ficklin, Stephen, Rosyara, Umesh R, Stegmeir, Travis, Sebolt, Audrey, Gilmore, Barbara, Lawley, Cindy, Mockler, Todd C, Bryant, Douglas W, Wilhelm, Larry, Iezzoni, Amy, Wu, Rongling

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Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa von Vining, Kelly, Pomraning, Kyle R, Wilhelm, Larry J, Ma, Cathleen, Pellegrini, Matteo, Di, Yanming, Mockler, Todd C, Freitag, Michael, Strauss, Steven H

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Variation in base-substitution mutation in experimental and natural lineages of Caenorhabditis nematodes von Denver, Dee R, Wilhelm, Larry J, Howe, Dana K, Gafner, Kristin, Dolan, Peter C, Baer, Charles F

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Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data von Wilhelm, Larry J, Tripp, H James, Givan, Scott A, Smith, Daniel P, Giovannoni, Stephen J

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Methylation analysis by targeted bisulfite sequencing in large for gestational age (LGA) newborns: the LARGAN cohort von Carrizosa-Molina, Tamara, Casillas-Díaz, Natalia, Pérez-Nadador, Iris, Vales-Villamarín, Claudia, López-Martínez, Miguel Ángel, Riveiro-Álvarez, Rosa, Wilhelm, Larry, Cervera-Juanes, Rita, Garcés, Carmen, Lomniczi, Alejandro, Soriano-Guillén, Leandro

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Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergen... von Manning, Viola A, Pandelova, Iovanna, Dhillon, Braham, Wilhelm, Larry J, Goodwin, Stephen B, Berlin, Aaron M, Figueroa, Melania, Freitag, Michael, Hane, James K, Henrissat, Bernard, Holman, Wade H, Kodira, Chinnappa D, Martin, Joel, Oliver, Richard P, Robbertse, Barbara, Schackwitz, Wendy, Schwartz, David C, Spatafora, Joseph W, Turgeon, B Gillian, Yandava, Chandri, Young, Sarah, Zhou, Shiguo, Zeng, Qiandong, Grigoriev, Igor V, Ma, Li-Jun, Ciuffetti, Lynda M

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Selective sweeps and parallel mutation in the adaptive recovery from deleterious mutation in Caenorhabditis elegans von Denver, Dee R, Howe, Dana K, Wilhelm, Larry J, Palmer, Catherine A, Anderson, Jennifer L, Stein, Kevin C, Phillips, Patrick C, Estes, Suzanne

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High intraspecific recombination rate in a native population of Candidatus Pelagibacter ubique (SAR11) von Vergin, Kevin L, Tripp, H. James, Wilhelm, Larry J, Denver, Dee R, Rappé, Michael S, Giovannoni, Stephen J

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