AgroPortal: A vocabulary and ontology repository for agronomy von Jonquet, Clément, Toulet, Anne, Arnaud, Elizabeth, Aubin, Sophie, Dzalé Yeumo, Esther, Emonet, Vincent, Graybeal, John, Laporte, Marie-Angélique, Musen, Mark A., Pesce, Valeria, Larmande, Pierre

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Transcriptomic and metabolomic reveal OsCOI2 as the jasmonate-receptor master switch in rice root von Cheaib, Mohamad, Nguyen, Hieu Trang, Couderc, Marie, Serret, Julien, Soriano, Alexandre, Larmande, Pierre, Richter, Chris, Junker, Björn H, Raorane, Manish L, Petitot, Anne-Sophie, Champion, Antony

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The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes von Cubry, Philippe, Tranchant-Dubreuil, Christine, Thuillet, Anne-Céline, Monat, Cécile, Ndjiondjop, Marie-Noelle, Labadie, Karine, Cruaud, Corinne, Engelen, Stefan, Scarcelli, Nora, Rhoné, Bénédicte, Burgarella, Concetta, Dupuy, Christian, Larmande, Pierre, Wincker, Patrick, François, Olivier, Sabot, François, Vigouroux, Yves

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Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy von Venkatesan, Aravind, Tagny Ngompe, Gildas, Hassouni, Nordine El, Chentli, Imene, Guignon, Valentin, Jonquet, Clement, Ruiz, Manuel, Larmande, Pierre

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Enabling a fast annotation process with the Table2Annotation tool von Larmande, Pierre, Jibril, Kazim Muhammed

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COMOKIT: A Modeling Kit to Understand, Analyze, and Compare the Impacts of Mitigation Policies Against the COVID-19 Epidemic at the Scale of a City von Gaudou, Benoit, Huynh, Nghi Quang, Philippon, Damien, Brugière, Arthur, Chapuis, Kevin, Taillandier, Patrick, Larmande, Pierre, Drogoul, Alexis

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P-TRAP: a Panicle TRAit Phenotyping tool von A L-Tam, Faroq, Adam, Helene, Anjos, António dos, Lorieux, Mathias, Larmande, Pierre, Ghesquière, Alain, Jouannic, Stefan, Shahbazkia, Hamid Reza

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A unified approach to publish semantic annotations of agricultural documents as knowledge graphs von Yacoubi Ayadi, Nadia, Bernard, Stephan, Bossy, Robert, Courtin, Marine, Happi Happi, Bill Gates, Larmande, Pierre, Michel, Franck, Nédellec, Claire, Roussey, Catherine, Faron, Catherine

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OryzaGP: rice gene and protein dataset for named-entity recognition von Larmande, Pierre, Do, Huy, Wang, Yue

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Developing data interoperability using standards: A wheat community use case von Dzale Yeumo, Esther, Alaux, Michael, Arnaud, Elizabeth, Aubin, Sophie, Baumann, Ute, Buche, Patrice, Cooper, Laurel, Ćwiek-Kupczyńska, Hanna, Davey, Robert P., Fulss, Richard Allan, Jonquet, Clement, Laporte, Marie-Angélique, Larmande, Pierre, Pommier, Cyril, Protonotarios, Vassilis, Reverte, Carmen, Shrestha, Rosemary, Subirats, Imma, Venkatesan, Aravind, Whan, Alex, Quesneville, Hadi

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Oryza Tag Line, a phenotypic mutant database for the Génoplante rice insertion line library von Larmande, Pierre, Gay, Céline, Lorieux, Mathias, Périn, Christophe, Bouniol, Matthieu, Droc, Gaëtan, Sallaud, Christophe, Perez, Pascual, Barnola, Isabelle, Biderre-Petit, Corinne, Martin, Jérôme, Morel, Jean Benoît, Johnson, Alexander A.T, Bourgis, Fabienne, Ghesquière, Alain, Ruiz, Manuel, Courtois, Brigitte, Guiderdoni, Emmanuel

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PyRice: a Python package for querying Oryza sativa databases von Do, Quan, Bich Hai, Ho, Larmande, Pierre

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AgroLD: A Knowledge Graph for the Plant Sciences von Larmande, Pierre, Todorov, Konstantin

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Managing High-Density Genotyping Data with Gigwa von Sempéré, Guilhem, Larmande, Pierre, Rouard, Mathieu

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Developing data interoperability using standards: A wheat community use case [version 1; peer review: 1 approved] von Dzale Yeumo, Esther, Alaux, Michael, Arnaud, Elizabeth, Aubin, Sophie, Baumann, Ute, Buche, Patrice, Cooper, Laurel, Ćwiek-Kupczyńska, Hanna, Davey, Robert P, Fulss, Richard Allan, Jonquet, Clement, Laporte, Marie-Angélique, Larmande, Pierre, Pommier, Cyril, Protonotarios, Vassilis, Reverte, Carmen, Shrestha, Rosemary, Subirats, Imma, Venkatesan, Aravind, Whan, Alex, Quesneville, Hadi

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Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities von Cohen-Boulakia, Sarah, Belhajjame, Khalid, Collin, Olivier, Chopard, Jérôme, Froidevaux, Christine, Gaignard, Alban, Hinsen, Konrad, Larmande, Pierre, Bras, Yvan Le, Lemoine, Frédéric, Mareuil, Fabien, Ménager, Hervé, Pradal, Christophe, Blanchet, Christophe

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AgroLD: A Knowledge Graph Database for Plant Functional Genomics von Larmande, Pierre, Tagny Ngompe, Gildas, Venkatesan, Aravind, Ruiz, Manuel

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OryzaGP 2021 update: a rice gene and protein dataset for named-entity recognition von Larmande, Pierre, Liu, Yusha, Yao, Xinzhi, Xia, Jingbo

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Agronomic Linked Data von Venkatesan, Aravind, Tagny Ngompe, Gildas, Hassouni, Nordine El, Chentli, Imene, Guignon, Valentin, Jonquet, Clement, Ruiz, Manuel, Larmande, Pierre

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A unified approach to publish semantic annotations of agricultural documents as knowledge graphs von Yacoubi Ayadi, N., Bernard, S., Bossy, Robert, Courtin, Marine, Happi Happi, Bill Gates, Larmande, Pierre, Michel, F., Nédellec, Claire, Roussey, Catherine, Faron, C.

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