Reconciliation and evolution of Penicillium rubens genome-scale metabolic networks-What about specialised metabolism? von Nègre, Delphine, Larhlimi, Abdelhalim, Bertrand, Samuel

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A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems von Budinich, Marko, Bourdon, Jérémie, Larhlimi, Abdelhalim, Eveillard, Damien

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Contribution of genome‐scale metabolic modelling to niche theory von Régimbeau, Antoine, Budinich, Marko, Larhlimi, Abdelhalim, Pierella Karlusich, Juan José, Aumont, Olivier, Memery, Laurent, Bowler, Chris, Eveillard, Damien, Jordan, Ferenc

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F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networks von Larhlimi, Abdelhalim, David, Laszlo, Selbig, Joachim, Bockmayr, Alexander

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Control of fluxes in metabolic networks von Basler, Georg, Nikoloski, Zoran, Larhlimi, Abdelhalim, Barabási, Albert-László, Liu, Yang-Yu

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Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks von Prigent, Sylvain, Frioux, Clémence, Dittami, Simon M, Thiele, Sven, Larhlimi, Abdelhalim, Collet, Guillaume, Gutknecht, Fabien, Got, Jeanne, Eveillard, Damien, Bourdon, Jérémie, Plewniak, Frédéric, Tonon, Thierry, Siegel, Anne

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Impact of the Carbon and Nitrogen Supply on Relationships and Connectivity between Metabolism and Biomass in a Broad Panel of Arabidopsis Accessions von Sulpice, Ronan, Nikoloski, Zoran, Tschoep, Hendrik, Antonio, Carla, Kleessen, Sabrina, Larhlimi, Abdelhalim, Selbig, Joachim, Ishihara, Hirofumi, Gibon, Yves, Fernie, Alisdair R., Stitt, Mark

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Robustness of metabolic networks: A review of existing definitions von Larhlimi, Abdelhalim, Blachon, Sylvain, Selbig, Joachim, Nikoloski, Zoran

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Bayesian Integrative Modeling of Genome-Scale Metabolic and Regulatory Networks von Mhamdi, Hanen, Bourdon, Jérémie, Larhlimi, Abdelhalim, Elloumi, Mourad

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FFCA: a feasibility-based method for flux coupling analysis of metabolic networks von David, Laszlo, Marashi, Sayed-Amir, Larhlimi, Abdelhalim, Mieth, Bettina, Bockmayr, Alexander

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Reconciliation and evolution of Penicillium rubens genome-scale metabolic networks–What about specialised metabolism? von Delphine Nègre, Abdelhalim Larhlimi, Samuel Bertrand

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A new constraint-based description of the steady-state flux cone of metabolic networks von Larhlimi, Abdelhalim, Bockmayr, Alexander

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Impact of the Carbon and Nitrogen Supply on Relationships and Connectivity between Metabolism and Biomass in a Broad Panel of Arabidopsis Accessions1[W][OA] von Sulpice, Ronan, Nikoloski, Zoran, Tschoep, Hendrik, Antonio, Carla, Kleessen, Sabrina, Larhlimi, Abdelhalim, Selbig, Joachim, Ishihara, Hirofumi, Gibon, Yves, Fernie, Alisdair R., Stitt, Mark

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Seipin localizes at endoplasmic-reticulum-mitochondria contact sites to control mitochondrial calcium import and metabolism in adipocytes von Combot, Yoann, Salo, Veijo T., Chadeuf, Gilliane, Hölttä, Maarit, Ven, Katharina, Pulli, Ilari, Ducheix, Simon, Pecqueur, Claire, Renoult, Ophélie, Lak, Behnam, Li, Shiqian, Karhinen, Leena, Belevich, Ilya, Le May, Cedric, Rieusset, Jennifer, Le Lay, Soazig, Croyal, Mikael, Tayeb, Karim Si, Vihinen, Helena, Jokitalo, Eija, Törnquist, Kid, Vigouroux, Corinne, Cariou, Bertrand, Magré, Jocelyne, Larhlimi, Abdelhalim, Ikonen, Elina, Prieur, Xavier

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Plankton networks driving carbon export in the oligotrophic ocean von Guidi, Lionel, Chaffron, Samuel, Bittner, Lucie, Eveillard, Damien, Larhlimi, Abdelhalim, Roux, Simon, Darzi, Youssef, Audic, Stephane, Berline, Léo, Brum, Jennifer R., Coelho, Luis Pedro, Espinoza, Julio Cesar Ignacio, Malviya, Shruti, Sunagawa, Shinichi, Dimier, Céline, Kandels-Lewis, Stefanie, Picheral, Marc, Poulain, Julie, Searson, Sarah, Stemmann, Lars, Not, Fabrice, Hingamp, Pascal, Speich, Sabrina, Follows, Mick, Karp-Boss, Lee, Boss, Emmanuel, Ogata, Hiroyuki, Pesant, Stephane, Weissenbach, Jean, Wincker, Patrick, Acinas, Silvia G., Bork, Peer, de Vargas, Colomban, Iudicone, Daniele, Sullivan, Matthew B., Raes, Jeroen, Karsenti, Eric, Bowler, Chris, Gorsky, Gabriel

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OPINION PAPER Evolutionary Constraint-Based Formulation Requires New Bi-level Solving Techniques von Budinich, Marko, Bourdon, Jérémie, Larhlimi, Abdelhalim, Eveillard, Damien

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The influence of the local sequence environment on RNA loop structures von Schudoma, Christian, Larhlimi, Abdelhalim, Walther, Dirk

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Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks von Larhlimi, Abdelhalim, Basler, Georg, Grimbs, Sergio, Selbig, Joachim, Nikoloski, Zoran

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MAPA Distinguishes Genotype-Specific Variability of Highly Similar Regulatory Protein Isoforms in Potato Tuber von Hoehenwarter, Wolfgang, Larhlimi, Abdelhalim, Hummel, Jan, Egelhofer, Volker, Selbig, Joachim, van Dongen, Joost T, Wienkoop, Stefanie, Weckwerth, Wolfram

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A New Approach to Flux Coupling Analysis of Metabolic Networks von Larhlimi, Abdelhalim, Bockmayr, Alexander

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