Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes von Ingolia, Nicholas T., Lareau, Liana F., Weissman, Jonathan S.

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Regulation of splicing factors by alternative splicing and NMD is conserved between kingdoms yet evolutionarily flexible von Lareau, Liana F, Brenner, Steven E

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Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant von Deng, Xianding, Garcia-Knight, Miguel A., Khalid, Mir M., Servellita, Venice, Wang, Candace, Morris, Mary Kate, Sotomayor-González, Alicia, Glasner, Dustin R., Reyes, Kevin R., Gliwa, Amelia S., Reddy, Nikitha P., Sanchez San Martin, Claudia, Federman, Scot, Cheng, Jing, Balcerek, Joanna, Taylor, Jordan, Streithorst, Jessica A., Miller, Steve, Sreekumar, Bharath, Chen, Pei-Yi, Schulze-Gahmen, Ursula, Taha, Taha Y., Hayashi, Jennifer M., Simoneau, Camille R., Kumar, G. Renuka, McMahon, Sarah, Lidsky, Peter V., Xiao, Yinghong, Hemarajata, Peera, Green, Nicole M., Espinosa, Alex, Kath, Chantha, Haw, Monica, Bell, John, Hacker, Jill K., Hanson, Carl, Wadford, Debra A., Anaya, Carlos, Ferguson, Donna, Frankino, Phillip A., Shivram, Haridha, Lareau, Liana F., Wyman, Stacia K., Ott, Melanie, Andino, Raul, Chiu, Charles Y.

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Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments von Lareau, Liana F, Hite, Dustin H, Hogan, Gregory J, Brown, Patrick O

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Accurate design of translational output by a neural network model of ribosome distribution von Tunney, Robert, McGlincy, Nicholas J., Graham, Monica E., Naddaf, Nicki, Pachter, Lior, Lareau, Liana F.

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Coverage-dependent bias creates the appearance of binary splicing in single cells von Buen Abad Najar, Carlos F, Yosef, Nir, Lareau, Liana F

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Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling von Rice, Edward S, Kohno, Satomi, John, John St, Pham, Son, Howard, Jonathan, Lareau, Liana F, O'Connell, Brendan L, Hickey, Glenn, Armstrong, Joel, Deran, Alden, Fiddes, Ian, Platt, 2nd, Roy N, Gresham, Cathy, McCarthy, Fiona, Kern, Colin, Haan, David, Phan, Tan, Schmidt, Carl, Sanford, Jeremy R, Ray, David A, Paten, Benedict, Guillette, Jr, Louis J, Green, Richard E

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Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila von Hansen, Kasper Daniel, Lareau, Liana F, Blanchette, Marco, Green, Richard E, Meng, Qi, Rehwinkel, Jan, Gallusser, Fabian L, Izaurralde, Elisa, Rio, Donald C, Dudoit, Sandrine, Brenner, Steven E

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Accelerated RNA detection using tandem CRISPR nucleases von Liu, Tina Y., Knott, Gavin J., Smock, Dylan C. J., Desmarais, John J., Son, Sungmin, Bhuiya, Abdul, Jakhanwal, Shrutee, Prywes, Noam, Agrawal, Shreeya, Díaz de León Derby, María, Switz, Neil A., Armstrong, Maxim, Harris, Andrew R., Charles, Emeric J., Thornton, Brittney W., Fozouni, Parinaz, Shu, Jeffrey, Stephens, Stephanie I., Kumar, G. Renuka, Zhao, Chunyu, Mok, Amanda, Iavarone, Anthony T., Escajeda, Arturo M., McIntosh, Roger, Kim, Shineui, Dugan, Eli J., Pollard, Katherine S., Tan, Ming X., Ott, Melanie, Fletcher, Daniel A., Lareau, Liana F., Hsu, Patrick D., Savage, David F., Doudna, Jennifer A.

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Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements von Brenner, Steven E, Lareau, Liana F, Inada, Maki, Green, Richard E, Wengrod, Jordan C

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Identifying cell state-associated alternative splicing events and their coregulation von Buen Abad Najar, Carlos F, Burra, Prakruthi, Yosef, Nir, Lareau, Liana F

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Streamlined and sensitive mono- and di-ribosome profiling in yeast and human cells von Ferguson, Lucas, Upton, Heather E., Pimentel, Sydney C., Mok, Amanda, Lareau, Liana F., Collins, Kathleen, Ingolia, Nicholas T.

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riboviz 2: a flexible and robust ribosome profiling data analysis and visualization workflow von Cope, Alexander L, Anderson, Felicity, Favate, John, Jackson, Michael, Mok, Amanda, Kurowska, Anna, Liu, Junchen, MacKenzie, Emma, Shivakumar, Vikram, Tilton, Peter, Winterbourne, Sophie M, Xue, Siyin, Kavoussanakis, Kostas, Lareau, Liana F, Shah, Premal, Wallace, Edward W J

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The evolving roles of alternative splicing von Lareau, Liana F, Green, Richard E, Bhatnagar, Rajiv S, Brenner, Steven E

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Widespread predicted nonsense-mediated mRNA decay of alternatively-spliced transcripts of human normal and disease genes von Green, Richard E, Lewis, Benjamin P, Hillman, R Tyler, Blanchette, Marco, Lareau, Liana F, Garnett, Aaron T, Rio, Donald C, Brenner, Steven E

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Rapid detection of SARS-CoV-2 RNA in saliva via Cas13 von Chandrasekaran, Sita S., Agrawal, Shreeya, Fanton, Alison, Jangid, Aditya R., Charrez, Bérénice, Escajeda, Arturo M., Son, Sungmin, Mcintosh, Roger, Tran, Huyen, Bhuiya, Abdul, de León Derby, María Díaz, Switz, Neil A., Armstrong, Maxim, Harris, Andrew R., Prywes, Noam, Lukarska, Maria, Biering, Scott B., Smock, Dylan C. J., Mok, Amanda, Knott, Gavin J., Dang, Qi, Van Dis, Erik, Dugan, Eli, Kim, Shin, Liu, Tina Y., Moehle, Erica A., Kogut, Katherine, Eskenazi, Brenda, Harris, Eva, Stanley, Sarah A., Lareau, Liana F., Tan, Ming X., Fletcher, Daniel A., Doudna, Jennifer A., Savage, David F., Hsu, Patrick D.

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Widespread predicted nonsense-mediated mRNAdecay of alternatively-spliced transcripts of humannormal and disease genes von Green, Richard E., Lewis, Benjamin P., Hillman, R. Tyler, Blanchette, Marco, Lareau, Liana F., Garnett, Aaron T., Rio, Donald C., Brenner, Steven E.

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Publisher Correction: Accelerated RNA detection using tandem CRISPR nucleases von Liu, Tina Y., Knott, Gavin J., Smock, Dylan C. J., Desmarais, John J., Son, Sungmin, Bhuiya, Abdul, Jakhanwal, Shrutee, Prywes, Noam, Agrawal, Shreeya, Díaz de León Derby, María, Switz, Neil A., Armstrong, Maxim, Harris, Andrew R., Charles, Emeric J., Thornton, Brittney W., Fozouni, Parinaz, Shu, Jeffrey, Stephens, Stephanie I., Kumar, G. Renuka, Zhao, Chunyu, Mok, Amanda, Iavarone, Anthony T., Escajeda, Arturo M., McIntosh, Roger, Kim, Shineui, Dugan, Eli J., Pollard, Katherine S., Tan, Ming X., Ott, Melanie, Fletcher, Daniel A., Lareau, Liana F., Hsu, Patrick D., Savage, David F., Doudna, Jennifer A.

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Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity of Mammalian Proteomes von Ingolia, Nicholas T., Lareau, Liana F., Weissman, Jonathan S.

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Methods for genome assembly and haplotype phasing von Green, Jr., Richard E, Lareau, Liana F

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