Unlocking a signal of introgression from codons in Lachancea kluyveri using a mutation-selection model von Landerer, Cedric, O'Meara, Brian C, Zaretzki, Russell, Gilchrist, Michael A

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Pitchfork and Gprasp2 Target Smoothened to the Primary Cilium for Hedgehog Pathway Activation von Jung, Bomi, Padula, Daniela, Burtscher, Ingo, Landerer, Cedric, Lutter, Dominik, Theis, Fabian, Messias, Ana C, Geerlof, Arie, Sattler, Michael, Kremmer, Elisabeth, Boldt, Karsten, Ueffing, Marius, Lickert, Heiko

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Estimating Gene Expression and Codon-Specific Translational Efficiencies, Mutation Biases, and Selection Coefficients from Genomic Data Alone von Gilchrist, Michael A, Chen, Wei-Chen, Shah, Premal, Landerer, Cedric L, Zaretzki, Russell

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Homology-based inference sets the bar high for protein function prediction von Hamp, Tobias, Kassner, Rebecca, Seemayer, Stefan, Vicedo, Esmeralda, Schaefer, Christian, Achten, Dominik, Auer, Florian, Boehm, Ariane, Braun, Tatjana, Hecht, Maximilian, Heron, Mark, Hönigschmid, Peter, Hopf, Thomas A, Kaufmann, Stefanie, Kiening, Michael, Krompass, Denis, Landerer, Cedric, Mahlich, Yannick, Roos, Manfred, Rost, Burkhard

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Fitness Effects of Phenotypic Mutations at Proteome-Scale Reveal Optimality of Translation Machinery von Landerer, Cedric, Poehls, Jonas, Toth-Petroczy, Agnes

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deTELpy: Python package for high-throughput detection of amino acid substitutions in mass spectrometry datasets von Landerer, Cedric, Scheremetjew, Maxim, Moon, HongKee, Hersemann, Lena, Toth-Petroczy, Agnes

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Phenotypic mutations contribute to protein diversity and shape protein evolution von Romero Romero, Maria Luisa, Landerer, Cedric, Poehls, Jonas, Toth‐Petroczy, Agnes

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A large-scale evaluation of computational protein function prediction von Clark, Wyatt T, Oron, Tal Ronnen, Schnoes, Alexandra M, Wittkop, Tobias, Sokolov, Artem, Graim, Kiley, Funk, Christopher, Verspoor, Karin, Ben-Hur, Asa, Pandey, Gaurav, Yunes, Jeffrey M, Talwalkar, Ameet S, Repo, Susanna, Souza, Michael L, Piovesan, Damiano, Casadio, Rita, Wang, Zheng, Cheng, Jianlin, Fang, Hai, Gough, Julian, Koskinen, Patrik, Törönen, Petri, Nokso-Koivisto, Jussi, Holm, Liisa, Cozzetto, Domenico, Buchan, Daniel W A, Bryson, Kevin, Jones, David T, Limaye, Bhakti, Inamdar, Harshal, Datta, Avik, Manjari, Sunitha K, Joshi, Rajendra, Chitale, Meghana, Kihara, Daisuke, Lisewski, Andreas M, Erdin, Serkan, Venner, Eric, Lichtarge, Olivier, Rentzsch, Robert, Yang, Haixuan, Romero, Alfonso E, Bhat, Prajwal, Paccanaro, Alberto, Hamp, Tobias, Kaßner, Rebecca, Seemayer, Stefan, Vicedo, Esmeralda, Schaefer, Christian, Achten, Dominik, Auer, Florian, Boehm, Ariane, Braun, Tatjana, Hecht, Maximilian, Heron, Mark, Hönigschmid, Peter, Hopf, Thomas A, Kaufmann, Stefanie, Kiening, Michael, Krompass, Denis, Landerer, Cedric, Mahlich, Yannick, Roos, Manfred, Björne, Jari, Salakoski, Tapio, Wong, Andrew, Shatkay, Hagit, Gatzmann, Fanny, Sommer, Ingolf, Wass, Mark N, Sternberg, Michael J E, Škunca, Nives, Supek, Fran, Bošnjak, Matko, Panov, Panče, Džeroski, Sašo, Šmuc, Tomislav, Kourmpetis, Yiannis A I, van Dijk, Aalt D J, Braak, Cajo J F ter, Zhou, Yuanpeng, Gong, Qingtian, Dong, Xinran, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Di Camillo, Barbara, Toppo, Stefano, Lan, Liang, Djuric, Nemanja, Guo, Yuhong, Vucetic, Slobodan, Bairoch, Amos, Linial, Michal, Babbitt, Patricia C, Brenner, Steven E, Orengo, Christine, Mooney, Sean D, Friedberg, Iddo

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The Rab5 effector FERRY links early endosomes with mRNA localization von Schuhmacher, Jan S., tom Dieck, Susanne, Christoforidis, Savvas, Landerer, Cedric, Davila Gallesio, Jimena, Hersemann, Lena, Seifert, Sarah, Schäfer, Ramona, Giner, Angelika, Toth-Petroczy, Agnes, Kalaidzidis, Yannis, Bohnsack, Katherine E., Bohnsack, Markus T., Schuman, Erin M., Zerial, Marino

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AnaCoDa: analyzing codon data with Bayesian mixture models von Landerer, Cedric, Cope, Alexander, Zaretzki, Russell, Gilchrist, Michael A

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CD-CODE: crowdsourcing condensate database and encyclopedia von Rostam, Nadia, Ghosh, Soumyadeep, Chow, Chi Fung Willis, Hadarovich, Anna, Landerer, Cedric, Ghosh, Rajat, Moon, HongKee, Hersemann, Lena, Mitrea, Diana M., Klein, Isaac A., Hyman, Anthony A., Toth-Petroczy, Agnes

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Population Genetics Based Phylogenetics Under Stabilizing Selection for an Optimal Amino Acid Sequence: A Nested Modeling Approach von Beaulieu, Jeremy M, O'Meara, Brian C, Zaretzki, Russell, Landerer, Cedric, Chai, Juanjuan, Gilchrist, Michael A

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RECOMMENDATIONS FOR USING MSBAYES TO INCORPORATE UNCERTAINTY IN SELECTING AN ABC MODEL PRIOR: A RESPONSE TO OAKS ET AL von Hickerson, Michael J., Stone, Graham N., Lohse, Konrad, Demos, Terrence C., Xie, Xiaoou, Landerer, Cedric, Takebayashi, Naoki

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RECOMMENDATIONS FOR USING MSBAYES TO INCORPORATE UNCERTAINTY IN SELECTING AN ABC MODEL PRIOR: A RESPONSE TO OAKS ET AL: BRIEF COMMUNICATION von Hickerson, Michael J., Stone, Graham N., Lohse, Konrad, Demos, Terrence C., Xie, Xiaoou, Landerer, Cedric, Takebayashi, Naoki

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Pitchfork and Gprasp2 Target Smoothened to the Primary Cilium for Hedgehog Pathway Activation von Jung, Bomi, Padula, Daniela, Burtscher, Ingo, Landerer, Cedric, Lutter, Dominik, Theis, Fabian, Messias, Ana C, Geerlof, Arie, Sattler, Michael, Kremmer, Elisabeth, Boldt, Karsten, Ueffing, Marius, Lickert, Heiko

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Data from: Recommendations for using msBayes to incorporate uncertainty in selecting an ABC model prior: a response to Oaks et al von Hickerson, Michael James, Stone, Graham N., Lohse, Konrad, Demos, Terrence C., Xie, Xiaoou, Landerer, Cedric, Takebayashi, Naoki

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HU_IB_psi18_BFCalculation_110812 von Hickerson, Michael James, Stone, Graham N., Lohse, Konrad, Demos, Terrence C., Landerer, Cedric, Xie, Xiaoou, Takebayashi, Naoki

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batch_table1_prior von Hickerson, Michael James, Stone, Graham N., Lohse, Konrad, Demos, Terrence C., Landerer, Cedric, Xie, Xiaoou, Takebayashi, Naoki

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table_S3_01272013 von Hickerson, Michael James, Stone, Graham N., Lohse, Konrad, Demos, Terrence C., Landerer, Cedric, Xie, Xiaoou, Takebayashi, Naoki

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batchPulse2_23 von Hickerson, Michael James, Stone, Graham N., Lohse, Konrad, Demos, Terrence C., Landerer, Cedric, Xie, Xiaoou, Takebayashi, Naoki

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