Prodigal: prokaryotic gene recognition and translation initiation site identification von Hyatt, Doug, Chen, Gwo-Liang, Locascio, Philip F, Land, Miriam L, Larimer, Frank W, Hauser, Loren J

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The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation von Mavromatis, Konstantinos, Land, Miriam L, Brettin, Thomas S, Quest, Daniel J, Copeland, Alex, Clum, Alicia, Goodwin, Lynne, Woyke, Tanja, Lapidus, Alla, Klenk, Hans Peter, Cottingham, Robert W, Kyrpides, Nikos C

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Enigmatic, ultrasmall, uncultivated Archaea von Baker, Brett J, Comolli, Luis R, Dick, Gregory J, Hauser, Loren J, Hyatt, Doug, Dill, Brian D, Land, Miriam L, VerBerkmoes, Nathan C, Hettich, Robert L, Banfield, Jillian F

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Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum von Brown, Steven D., Guss, Adam M., Karpinets, Tatiana V., Parks, Jerry M., Smolin, Nikolai, Yang, Shihui, Land, Miriam L., Klingeman, Dawn M., Bhandiwad, Ashwini, Rodriguez, Miguel, Raman, Babu, Shao, Xiongjun, Mielenz, Jonathan R., Smith, Jeremy C., Keller, Martin, Lynd, Lee R.

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Twenty-One Genome Sequences from Pseudomonas Species and 19 Genome Sequences from Diverse Bacteria Isolated from the Rhizosphere and Endosphere of Populus deltoides von BROWN, Steven D, UTTURKAR, Sagar M, KLINGEMAN, Dawn M, JOHNSON, Courtney M, MARTIN, Stanton L, LAND, Miriam L, LU, Tse-Yuan S, SCHADT, Christopher W, DOKTYCZ, Mitchel J, PELLETIER, Dale A

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The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens von Aklujkar, Muktak, Krushkal, Julia, DiBartolo, Genevieve, Lapidus, Alla, Land, Miriam L, Lovley, Derek R

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Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis von Utturkar, Sagar M, Cude, W Nathan, Robeson, Jr, Michael S, Yang, Zamin K, Klingeman, Dawn M, Land, Miriam L, Allman, Steve L, Lu, Tse-Yuan S, Brown, Steven D, Schadt, Christopher W, Podar, Mircea, Doktycz, Mitchel J, Pelletier, Dale A

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Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus von Tang, Kuo-Hsiang, Barry, Kerrie, Chertkov, Olga, Dalin, Eileen, Han, Cliff S, Hauser, Loren J, Honchak, Barbara M, Karbach, Lauren E, Land, Miriam L, Lapidus, Alla, Larimer, Frank W, Mikhailova, Natalia, Pitluck, Samuel, Pierson, Beverly K, Blankenship, Robert E

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Complete Genome Sequences of Six Strains of the Genus Methylobacterium von Marx, Christopher J, Bringel, Françoise, Chistoserdova, Ludmila, Moulin, Lionel, Farhan Ul Haque, Muhammad, Fleischman, Darrell E, Gruffaz, Christelle, Jourand, Philippe, Knief, Claudia, Lee, Ming-Chun, Muller, Emilie E. L, Nadalig, Thierry, Peyraud, Rémi, Roselli, Sandro, Russ, Lina, Goodwin, Lynne A, Ivanova, Natalia, Kyrpides, Nikos, Lajus, Aurélie, Land, Miriam L, Médigue, Claudine, Mikhailova, Natalia, Nolan, Matt, Woyke, Tanja, Stolyar, Sergey, Vorholt, Julia A, Vuilleumier, Stéphane

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Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae von Yang, Shihui, Land, Miriam L., Klingeman, Dawn M., Pelletier, Dale A., Lu, Tse-Yuan S., Martin, Stanton L., Guo, Hao-Bo, Smith, Jeremy C., Brown, Steven D., Demain, Arnold L.

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Caldicellulosiruptor Core and Pangenomes Reveal Determinants for Noncellulosomal Thermophilic Deconstruction of Plant Biomass von Blumer-Schuette, Sara E, Giannone, Richard J, Zurawski, Jeffrey V, Ozdemir, Inci, Ma, Qin, Yin, Yanbin, Xu, Ying, Kataeva, Irina, Poole, Farris L, Adams, Michael W. W, Hamilton-Brehm, Scott D, Elkins, James G, Larimer, Frank W, Land, Miriam L, Hauser, Loren J, Cottingham, Robert W, Hettich, Robert L, Kelly, Robert M

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Genome Sequence of “Candidatus Frankia datiscae” Dg1, the Uncultured Microsymbiont from Nitrogen-Fixing Root Nodules of the Dicot Datisca glomerata von PERSSON, Tomas, BENSON, David R, SHUNSHENG HAN, HAN, James, WOYKE, Tanja, PITLUCK, Sam, PENNACCHIO, Len, NOLAN, Matt, IVANOVA, Natalia, PATI, Amrita, LAND, Miriam L, PAWLOWSKI, Katharina, NORMAND, Philippe, BERRY, Alison M, VANDEN HEUVEL, Brian, PUJIC, Petar, CHERTKOV, Olga, TESHIMA, Hazuki, BRUCE, David C, DETTER, Chris, TAPIA, Roxanne

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Trichodesmium genome maintains abundant, widespread noncoding DNA in situ, despite oligotrophic lifestyle von Walworth, Nathan, Pfreundt, Ulrike, Nelson, William C, Mincer, Tracy, Heidelberg, John F, Fu, Feixue, Waterbury, John B, Glavina del Rio, Tijana, Goodwin, Lynne, Kyrpides, Nikos C, Land, Miriam L, Woyke, Tanja, Hutchins, David A, Hess, Wolfgang R, Webb, Eric A

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Complete Genome Sequence of Nitrosospira multiformis, an Ammonia-Oxidizing Bacterium from the Soil Environment von Norton, Jeanette M, Klotz, Martin G, Stein, Lisa Y, Arp, Daniel J, Bottomley, Peter J, Chain, Patrick S.G, Hauser, Loren J, Land, Miriam L, Larimer, Frank W, Shin, Maria W, Starkenburg, Shawn R

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Complete Genome of the Cellulolytic Ruminal Bacterium Ruminococcus albus 7 von SUEN, Garret, STEVENSON, David M, HAUSER, Loren J, IVANOVA, Natalia N, KYRPIDES, Nikos C, LAND, Miriam L, LAPIDUS, Alla, LUCAS, Susan, OVCHINNIKOVA, Galina, PITLUCK, Sam, TAPIA, Roxanne, WOYKE, Tanja, BRUCE, David C, BOYUM, Julie, MEAD, David, WEIMER, Paul J, CHERTKOV, Olga, COPELAND, Alex, CHENG, Jan-Feng, DETTER, Chris, DETTER, John C, GOODWIN, Lynne A, HAN, Cliff S

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Genomics of an extreme psychrophile, Psychromonas ingrahamii von Riley, Monica, Staley, James T, Danchin, Antoine, Wang, Ting Zhang, Brettin, Thomas S, Hauser, Loren J, Land, Miriam L, Thompson, Linda S

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Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments von Oda, Yasuhiro, Larimer, Frank W, Chain, Patrick S.G, Malfatti, Stephanie, Shin, Maria V, Vergez, Lisa M, Hauser, Loren, Land, Miriam L, Braatsch, Stephan, Beatty, J. Thomas, Pelletier, Dale A, Schaefer, Amy L, Harwood, Caroline S

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The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments von Aklujkar, Muktak, Young, Nelson D, Holmes, Dawn, Chavan, Milind, Risso, Carla, Kiss, Hajnalka E, Han, Cliff S, Land, Miriam L, Lovley, Derek R

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KBase: The United States Department of Energy Systems Biology Knowledgebase von Arkin, Adam P, Cottingham, Robert W, Henry, Christopher S, Harris, Nomi L, Stevens, Rick L, Maslov, Sergei, Dehal, Paramvir, Ware, Doreen, Perez, Fernando, Canon, Shane, Sneddon, Michael W, Henderson, Matthew L, Riehl, William J, Murphy-Olson, Dan, Chan, Stephen Y, Kamimura, Roy T, Kumari, Sunita, Drake, Meghan M, Brettin, Thomas S, Glass, Elizabeth M, Chivian, Dylan, Gunter, Dan, Weston, David J, Allen, Benjamin H, Baumohl, Jason, Best, Aaron A, Bowen, Ben, Brenner, Steven E, Bun, Christopher C, Chandonia, John-Marc, Chia, Jer-Ming, Colasanti, Ric, Conrad, Neal, Davis, James J, Davison, Brian H, DeJongh, Matthew, Devoid, Scott, Dietrich, Emily, Dubchak, Inna, Edirisinghe, Janaka N, Fang, Gang, Faria, José P, Frybarger, Paul M, Gerlach, Wolfgang, Gerstein, Mark, Greiner, Annette, Gurtowski, James, Haun, Holly L, He, Fei, Jain, Rashmi, Joachimiak, Marcin P, Keegan, Kevin P, Kondo, Shinnosuke, Kumar, Vivek, Land, Miriam L, Meyer, Folker, Mills, Marissa, Novichkov, Pavel S, Oh, Taeyun, Olsen, Gary J, Olson, Robert, Parrello, Bruce, Pasternak, Shiran, Pearson, Erik, Poon, Sarah S, Price, Gavin A, Ramakrishnan, Srividya, Ranjan, Priya, Ronald, Pamela C, Schatz, Michael C, Seaver, Samuel M D, Shukla, Maulik, Sutormin, Roman A, Syed, Mustafa H, Thomason, James, Tintle, Nathan L, Wang, Daifeng, Xia, Fangfang, Yoo, Hyunseung, Yoo, Shinjae, Yu, Dantong

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Extending the Bacillus cereus group genomics to putative food-borne pathogens of different toxicity von Lapidus, Alla, Goltsman, Eugene, Auger, Sandrine, Galleron, Nathalie, Ségurens, Béatrice, Dossat, Carole, Land, Miriam L., Broussolle, Veronique, Brillard, Julien, Guinebretiere, Marie-Helene, Sanchis, Vincent, Nguen-the, Christophe, Lereclus, Didier, Richardson, Paul, Wincker, Patrick, Weissenbach, Jean, Ehrlich, S. Dusko, Sorokin, Alexei

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