Computational Modeling of Signaling Networks von Nguyen, Lan K

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Systems Biology: Identifiability Analysis and Parameter Identification via Systems-Biology-Informed Neural Networks von Daneker, Mitchell, Zhang, Zhen, Karniadakis, George Em, Lu, Lu

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Design Principles Underlying Robust Adaptation of Complex Biochemical Networks von Araujo, Robyn P., Liotta, Lance A.

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Multi-Dimensional Analysis of Biochemical Network Dynamics Using pyDYVIPAC von Lan, Yunduo, Nguyen, Lan K.

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Integrating Multi-Omics Data to Construct Reliable Interconnected Models of Signaling, Gene Regulatory, and Metabolic Pathways von Kumar, Krishna, Bhowmik, Debaleena, Mandloi, Sapan, Gautam, Anupam, Lahiri, Abhishake, Biswas, Nupur, Paul, Sandip, Chakrabarti, Saikat

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A Practical Guide to Reproducible Modeling for Biochemical Networks von Porubsky, Veronica L., Sauro, Herbert M.

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A Practical Guide for the Efficient Formulation and Calibration of Large, Energy- and Rule-Based Models of Cellular Signal Transduction von Fröhlich, Fabian

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Rapid Particle-Based Simulations of Cellular Signalling with the FLAME-Accelerated Signalling Tool (FaST) and GPUs von Fullstone, Gavin

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Computational Random Mutagenesis to Investigate RAS Mutant Signaling von Stites, Edward C.

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Modeling Cellular Signaling Variability Based on Single-Cell Data: The TGFβ-SMAD Signaling Pathway von Sarma, Uddipan, Ripka, Lorenz, Anyaegbunam, Uchenna Alex, Legewie, Stefan

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Application of Optogenetics to Probe the Signaling Dynamics of Cell Fate Decision-Making von Johnson, Heath E.

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Live-Cell Sender-Receiver Co-cultures for Quantitative Measurement of Paracrine Signaling Dynamics, Gene Expression, and Drug Response von Pargett, Michael, Ram, Abhineet R., Murthy, Vaibhav, Davies, Alexander E.

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Efficient Quantification of Extrinsic Fluctuations via Stochastic Simulations von Samanta, Tagari, Kar, Sandip

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Quantitative Imaging Analysis of NF-κB for Mathematical Modeling Applications von Wibisana, Johannes Nicolaus, Inaba, Takehiko, Sako, Yasushi, Okada, Mariko

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Resolving Crosstalk Between Signaling Pathways Using Mathematical Modeling and Time-Resolved Single Cell Data von Konrath, Fabian, Loewer, Alexander, Wolf, Jana

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SynDISCO: A Mechanistic Modeling-Based Framework for Predictive Prioritization of Synergistic Drug Combinations Targeting Cell Signalling Networks von Shin, Sung-Young, Nguyen, Lan K.

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Meta-Dynamic Network Modelling for Biochemical Networks von Hart, Anthony, Nguyen, Lan K.

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Mathematically Modeling the Effect of Endocrine and Cdk4/6 Inhibitor Therapies on Breast Cancer Cells von He, Wei, Shajahan-Haq, Ayesha N., Baumann, William T.

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Development of a Controlled Release of Salicylic Acid Loaded Stearic Acid-Oleic Acid Nanoparticles in Cream for Topical Delivery von Tan, L. P., Lee, P. F., Misran, M., Woo, J. O.

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A pipelined front-end, timing, and amplitude digitizing system von Lan, K.A., Cui, Y., Hungerford, E.V.

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