Comparison of the Mitochondrial Genomes and Steady State Transcriptomes of Two Strains of the Trypanosomatid Parasite, Leishmania tarentolae von Simpson, Larry, Douglass, Stephen M, Lake, James A, Pellegrini, Matteo, Li, Feng

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Horizontal Gene Transfer among Genomes: The Complexity Hypothesis von Jain, Ravi, Rivera, Maria C., Lake, James A.

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Genome beginnings: rooting the tree of life von Lake, James A., Skophammer, Ryan G., Herbold, Craig W., Servin, Jacqueline A.

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Eukaryotic origins von Lake, James A.

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Evidence for an early prokaryotic endosymbiosis von Lake, James A

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Genomic Evidence for Two Functionally Distinct Gene Classes von Rivera, Maria C., Jain, Ravi, Moore, Jonathan E., Lake, James A.

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Evidence for a New Root of the Tree of Life von Lake, James A., Servin, Jacqueline A., Herbold, Craig W., Skophammer, Ryan G.

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The ring of life provides evidence for a genome fusion origin of eukaryotes von Lake, James A, Rivera, Maria C

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Decoding the Genomic Tree of Life von Simonson, Anne B., Servin, Jacqueline A., Skophammer, Ryan G., Herbold, Craig W., Rivera, Maria C., Lake, James A.

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Lynn Margulis (1938–2011) von Lake, James A.

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Uncovering the Genomic Origins of Life von Lake, James A, Larsen, Joseph, Tran, Dan Thy, Sinsheimer, Janet S

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Evidence for a clade of nematodes, arthropods and other moulting animals von Aguinaldo, Anna Marie A, Turbeville, James M, Linford, Lawrence S, Rivera, Maria C, Garey, James R, Raff, Rudolf A, Lake, James A

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Disappearing act von Lake, James A

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Evidence Excluding the Root of the Tree of Life from the Actinobacteria von Servin, Jacqueline A., Herbold, Craig W., Skophammer, Ryan G., Lake, James A.

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The deep roots of the rings of life von Lake, James A, Sinsheimer, Janet S

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Reconstructing Evolutionary Graphs: 3D Parsimony von Lake, James A.

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Deriving the genomic tree of life in the presence of horizontal gene transfer: conditioned reconstruction von Lake, James A, Rivera, Maria C

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A Type IB Topoisomerase with DNA Repair Activities von Belova, Galina I., Prasad, Rajendra, Kozyavkin, Sergei A., Lake, James A., Wilson, Samuel H., Slesarev, Alexei I.

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Evidence for a Gram-positive, Eubacterial Root of the Tree of Life von Skophammer, Ryan G., Servin, Jacqueline A., Herbold, Craig W., Lake, James A.

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Rings Reconcile Genotypic and Phenotypic Evolution within the Proteobacteria von Lake, James A, Larsen, Joseph, Sarna, Brooke, de la Haba, Rafael R, Pu, Yiyi, Koo, HyunMin, Zhao, Jun, Sinsheimer, Janet S

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