The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies von Yoshida, Catherine E, Kruczkiewicz, Peter, Laing, Chad R, Lingohr, Erika J, Gannon, Victor P J, Nash, John H E, Taboada, Eduardo N

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Pan-genome Analyses of the Species Salmonella enterica , and Identification of Genomic Markers Predictive for Species, Subspecies, and Serovar von Laing, Chad R, Whiteside, Matthew D, Gannon, Victor P J

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A comparison of Shiga-toxin 2 bacteriophage from classical enterohemorrhagic Escherichia coli serotypes and the German E. coli O104:H4 outbreak strain von Laing, Chad R, Zhang, Yongxiang, Gilmour, Matthew W, Allen, Vanessa, Johnson, Roger, Thomas, James E, Gannon, Victor P J

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Comparative Genomic Analysis of Escherichia coli O157:H7 Isolated from Super-Shedder and Low-Shedder Cattle von Munns, Krysty D, Zaheer, Rahat, Xu, Yong, Stanford, Kim, Laing, Chad R, Gannon, Victor P J, Selinger, L Brent, McAllister, Tim A

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Multi-Year Persistence of Verotoxigenic Escherichia coli (VTEC) in a Closed Canadian Beef Herd: A Cohort Study von Wang, Lu Ya Ruth, Jokinen, Cassandra C, Laing, Chad R, Johnson, Roger P, Ziebell, Kim, Gannon, Victor P J

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In silico genomic analyses reveal three distinct lineages of Escherichia coli O157:H7, one of which is associated with hyper-virulence von Laing, Chad R, Buchanan, Cody, Taboada, Eduardo N, Zhang, Yongxiang, Karmali, Mohamed A, Thomas, James E, Gannon, Victor Pj

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Commensal Escherichia coli Strains of Bovine Origin Competitively Mitigated Escherichia coli O157:H7 in a Gnotobiotic Murine Intestinal Colonization Model with or without Physiolog... von Lange, Maximo E, Clarke, Sandra T, Boras, Valerie F, Brown, Catherine L J, Zhang, Guangzhi, Laing, Chad R, Uwiera, Richard R E, Montina, Tony, Kalmokoff, Martin L, Taboada, Eduardo N, Gannon, Victor P J, Metz, Gerlinde A S, Church, John S, Inglis, G Douglas

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Persistent cross-species transmission systems dominate Shiga toxin-producing Escherichia coli O157:H7 epidemiology in a high incidence region: A genomic epidemiology study von Tarr, Gillian A M, Chui, Linda, Stanford, Kim, Bumunang, Emmanuel W, Zaheer, Rahat, Li, Vincent, Freedman, Stephen B, Laing, Chad R, McAllister, Tim A

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Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems von Franz, Eelco, Delaquis, Pascal, Morabito, Stefano, Beutin, Lothar, Gobius, Kari, Rasko, David A., Bono, Jim, French, Nigel, Osek, Jacek, Lindstedt, Bjørn-Arne, Muniesa, Maite, Manning, Shannon, LeJeune, Jeff, Callaway, Todd, Beatson, Scott, Eppinger, Mark, Dallman, Tim, Forbes, Ken J., Aarts, Henk, Pearl, David L., Gannon, Victor P.J., Laing, Chad R., Strachan, Norval J.C.

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Phylotyper: in silico predictor of gene subtypes von Whiteside, Matthew D, Gannon, Victor P J, Laing, Chad R

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Targeting discriminatory SNPs in Salmonella enterica serovar Heidelberg genomes using RNase H2-dependent PCR von Labbé, Geneviève, Rankin, Marisa A., Robertson, James, Moffat, Jonathan, Giang, Elissa, Lee, Lok Kan, Ziebell, Kim, MacKinnon, Joanne, Laing, Chad R., Parmley, E. Jane, Agunos, Agnes, Daignault, Danielle, Bekal, Sadjia, Chui, Linda, MacDonald, Kimberley A., Hoang, Linda, Slavic, Durda, Ramsay, Danielle, Pollari, Frank, Nash, John H.E., Johnson, Roger P.

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Spatial and Temporal Drivers of Zoonotic Pathogen Contamination of an Agricultural Watershed von Jokinen, Cassandra C., Edge, Thomas A., Koning, Wendell, Laing, Chad R., Lapen, David R., Miller, Jim, Mutschall, Steven, Scott, Andrew, Taboada, Eduardo N., Thomas, James E., Topp, Edward, Wilkes, Graham, Gannon, Victor P. J.

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SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli von Whiteside, Matthew D, Laing, Chad R, Manji, Akiff, Kruczkiewicz, Peter, Taboada, Eduardo N, Gannon, Victor P J

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A new pyrosequencing assay for rapid detection and genotyping of Shiga toxin, intimin and O157-specific rfbE genes of Escherichia coli von Goji, Noriko, Mathews, Amit, Huszczynski, George, Laing, Chad R., Gannon, Victor P.J., Graham, Morag R., Amoako, Kingsley K.

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Rapid and accurate SNP genotyping of clonal bacterial pathogens with BioHansel von Labbé, Geneviève, Kruczkiewicz, Peter, Robertson, James, Mabon, Philip, Schonfeld, Justin, Kein, Daniel, Rankin, Marisa A, Gopez, Matthew, Hole, Darian, Son, David, Knox, Natalie, Laing, Chad R, Bessonov, Kyrylo, Taboada, Eduardo N, Yoshida, Catherine, Ziebell, Kim, Nichani, Anil, Johnson, Roger P, Van Domselaar, Gary, Nash, John H E

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Assessing the genomic relatedness and evolutionary rates of persistent verotoxigenic Escherichia coli serotypes within a closed beef herd in Canada von Wang, Lu Ya Ruth, Jokinen, Cassandra C., Laing, Chad R., Johnson, Roger P., Ziebell, Kim, Gannon, Victor P. J.

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Spfy: an integrated graph database for real-time prediction of bacterial phenotypes and downstream comparative analyses von Le, Kevin K, Whiteside, Matthew D, Hopkins, James E, Gannon, Victor P J, Laing, Chad R

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Everything at once: Comparative analysis of the genomes of bacterial pathogens von Laing, Chad R., Zhang, Yongxiang, Thomas, James E., Gannon, Victor P.J.

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Characteristics of Clinical Shiga Toxin-Producing Escherichia coli Isolated from British Columbia von Hoang, Linda, Gannon, Victor P. J., Xu, Hai, Mesak, Lili R., Zhang, Yongxiang, Cancarevic, Ana, Laing, Chad R., Allen, Kevin J., Paccagnella, Ana

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Persistent cross-species transmission systems dominate Shiga toxin-producing Escherichia coli O157:H7 epidemiology in a high incidence region: A genomic epidemiology study von Tarr, Gillian AM, Chui, Linda, Stanford, Kim, Bumunang, Emmanuel W, Zaheer, Rahat, Li, Vincent, Freedman, Stephen B, Laing, Chad R, McAllister, Tim A

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