A circadian gene expression atlas in mammals: Implications for biology and medicine von Zhang, Ray, Lahens, Nicholas F., Ballance, Heather I., Hughes, Michael E., Hogenesch, John B.

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CircaDB: a database of mammalian circadian gene expression profiles von Pizarro, Angel, Hayer, Katharina, Lahens, Nicholas F, Hogenesch, John B

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G1/S cell cycle regulators mediate effects of circadian dysregulation on tumor growth and provide targets for timed anticancer treatment von Lee, Yool, Lahens, Nicholas F, Zhang, Shirley, Bedont, Joseph, Field, Jeffrey M, Sehgal, Amita

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A circadian clock regulates efflux by the blood-brain barrier in mice and human cells von Zhang, Shirley L., Lahens, Nicholas F., Yue, Zhifeng, Arnold, Denice M., Pakstis, Peter P., Schwarz, Jessica E., Sehgal, Amita

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A new view of transcriptome complexity and regulation through the lens of local splicing variations von Vaquero-Garcia, Jorge, Barrera, Alejandro, Gazzara, Matthew R, González-Vallinas, Juan, Lahens, Nicholas F, Hogenesch, John B, Lynch, Kristen W, Barash, Yoseph

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Ribosome profiling reveals an important role for translational control in circadian gene expression von Jang, Christopher, Lahens, Nicholas F, Hogenesch, John B, Sehgal, Amita

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Comparative evaluation of full-length isoform quantification from RNA-Seq von Sarantopoulou, Dimitra, Brooks, Thomas G., Nayak, Soumyashant, Mrcela, Antonijo, Lahens, Nicholas F., Grant, Gregory R.

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Diurnal rhythms of wrist temperature are associated with future disease risk in the UK Biobank von Brooks, Thomas G., Lahens, Nicholas F., Grant, Gregory R., Sheline, Yvette I., FitzGerald, Garret A., Skarke, Carsten

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Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM) von GRANT, Gregory R, FARKAS, Michael H, PIZARRO, Angel D, LAHENS, Nicholas F, SCHUG, Jonathan, BRUNK, Brian P, STOECKERT, Christian J, HOGENESCH, John B, PIERCE, Eric A

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Characterization of the genome and silk-gland transcriptomes of Darwin's bark spider (Caerostris darwini) von Babb, Paul L, Gregorič, Matjaž, Lahens, Nicholas F, Nicholson, David N, Hayashi, Cheryl Y, Higgins, Linden, Kuntner, Matjaž, Agnarsson, Ingi, Voight, Benjamin F

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RNA splicing analysis using heterogeneous and large RNA-seq datasets von Vaquero-Garcia, Jorge, Aicher, Joseph K., Jewell, San, Gazzara, Matthew R., Radens, Caleb M., Jha, Anupama, Norton, Scott S., Lahens, Nicholas F., Grant, Gregory R., Barash, Yoseph

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A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression von Lahens, Nicholas F, Ricciotti, Emanuela, Smirnova, Olga, Toorens, Erik, Kim, Eun Ji, Baruzzo, Giacomo, Hayer, Katharina E, Ganguly, Tapan, Schug, Jonathan, Grant, Gregory R

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Transcriptional profiling reveals extraordinary diversity among skeletal muscle tissues von Terry, Erin E, Zhang, Xiping, Hoffmann, Christy, Hughes, Laura D, Lewis, Scott A, Li, Jiajia, Wallace, Matthew J, Riley, Lance A, Douglas, Collin M, Gutierrez-Monreal, Miguel A, Lahens, Nicholas F, Gong, Ming C, Andrade, Francisco, Esser, Karyn A, Hughes, Michael E

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MOCCASIN: a method for correcting for known and unknown confounders in RNA splicing analysis von Slaff, Barry, Radens, Caleb M., Jewell, Paul, Jha, Anupama, Lahens, Nicholas F., Grant, Gregory R., Thomas-Tikhonenko, Andrei, Lynch, Kristen W., Barash, Yoseph

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CAMPAREE: a robust and configurable RNA expression simulator von Lahens, Nicholas F., Brooks, Thomas G., Sarantopoulou, Dimitra, Nayak, Soumyashant, Lawrence, Cris, Mrcela, Antonijo, Srinivasan, Anand, Schug, Jonathan, Hogenesch, John B., Barash, Yoseph, Grant, Gregory R.

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Comparative evaluation of RNA-Seq library preparation methods for strand-specificity and low input von Sarantopoulou, Dimitra, Tang, Soon Yew, Ricciotti, Emanuela, Lahens, Nicholas F., Lekkas, Damien, Schug, Jonathan, Guo, Xiaofeng S., Paschos, Georgios K., FitzGerald, Garret A., Pack, Allan I., Grant, Gregory R.

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Dietary challenges differentially affect activity and sleep/wake behavior in mus musculus: Isolating independent associations with diet/energy balance and body weight von Perron, Isaac J, Keenan, Brendan T, Chellappa, Karthikeyani, Lahens, Nicholas F, Yohn, Nicole L, Shockley, Keith R, Pack, Allan I, Veasey, Sigrid C

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Deep phenotyping of the lipidomic response in COVID‐19 and non‐COVID‐19 sepsis von Meng, Hu, Sengupta, Arjun, Ricciotti, Emanuela, Mrčela, Antonijo, Mathew, Divij, Mazaleuskaya, Liudmila L., Ghosh, Soumita, Brooks, Thomas G., Turner, Alexandra P., Schanoski, Alessa Soares, Lahens, Nicholas F., Tan, Ai Wen, Woolfork, Ashley, Grant, Greg, Susztak, Katalin, Letizia, Andrew G., Sealfon, Stuart C., Wherry, E. John, Laudanski, Krzysztof, Weljie, Aalim M., Meyer, Nuala J., FitzGerald, Garret A.

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The Nephila clavipes genome highlights the diversity of spider silk genes and their complex expression von Babb, Paul L, Lahens, Nicholas F, Correa-Garhwal, Sandra M, Nicholson, David N, Kim, Eun Ji, Hogenesch, John B, Kuntner, Matjaž, Higgins, Linden, Hayashi, Cheryl Y, Agnarsson, Ingi, Voight, Benjamin F

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Challenges and best practices in omics benchmarking von Brooks, Thomas G., Lahens, Nicholas F., Mrčela, Antonijo, Grant, Gregory R.

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