Genomic signatures for predicting the zoonotic potential of novel viruses von Ladner, Jason T

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Towards a post-pandemic future for global pathogen genome sequencing von Ladner, Jason T, Sahl, Jason W

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The population genetics of the causative agent of snake fungal disease indicate recent introductions to the USA von Ladner, Jason T, Palmer, Jonathan M, Ettinger, Cassandra L, Stajich, Jason E, Farrell, Terence M, Glorioso, Brad M, Lawson, Becki, Price, Steven J, Stengle, Anne G, Grear, Daniel A, Lorch, Jeffrey M

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Genomic basis for coral resilience to climate change von Barshis, Daniel J., Ladner, Jason T., Oliver, Thomas A., Seneca, François O., Traylor-Knowles, Nikki, Palumbi, Stephen R.

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Extensive sympatry, cryptic diversity and introgression throughout the geographic distribution of two coral species complexes von LADNER, JASON T., PALUMBI, STEPHEN R.

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Precision epidemiology for infectious disease control von Ladner, Jason T., Grubaugh, Nathan D., Pybus, Oliver G., Andersen, Kristian G.

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A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics von Brankin, Alice, Malone, Kerri M., Barilar, Ivan, Battaglia, Simone, Borroni, Emanuele, Pires Brandao, Angela, Cabibbe, Andrea Maurizio, Carter, Joshua, Chetty, Darren, Cirillo, Daniela María, Claxton, Pauline, Clifton, David A., Cohen, Ted, Coronel, Jorge, Crook, Derrick W., Dreyer, Viola, Earle, Sarah G., Escuyer, Vincent, Ferrazoli, Lucilaine, Gāo, George Fú, Gardy, Jennifer, Gharbia, Saheer, Teixeira Ghisi, Kelen, Ghodousi, Arash, Gibertoni Cruz, Ana Lúıza, Grandjean, Louis, Grazian, Clara, Groenheit, Ramona, Guthrie, Jennifer L., He, Wencong, Hoffmann, Harald, J., Sarah Hoosdally, Hunt, Martin, Ismail, Nazir Ahmed, Jarrett, Lisa, Joseph, Lavania, Jou, Ruwen, Kambli, Priti, Khot, Rukhsar, Knaggs, Jeff, Koch, Anastasia, Kohlerschmidt, Donna, Kouchaki, Samaneh, Lachapelle, Alexander S., Lalvani, Ajit, Grandjean Lapierre, Simon, Laurenson, Ian F., Letcher, Brice, Lin, Wan-Hsuan, Liu, Chunfa, Liu, Dongxin, Mandal, Ayan, Mansjö, Mikael, Matias, Daniela, Meintjes, Graeme, de Freitas Mendes, Flávia, Merker, Matthias, Mihalic, Marina, Millard, James, Miotto, Paolo, Mistry, Nerges, Moore, David, Musser, Kimberlee A., Ngcamu, Dumisani, Ngoc Nhung, Hoang, Niemann, Stefan, Soli Nilgiriwala, Kayzad, Nimmo, Camus, O'Donnell, Max, Okozi, Nana, Siqueira Oliveira, Rosangela, Omar, Shaheed Vally, Paton, Nicholas, Peto, Timothy Ea, Watanabe Pinhata, Juliana Maira, Plesnik, Sara, Puyen, Zully M., Rabodoarivelo, Marie Sylvianne, Rakotosamimanana, Niaina, Rancoita, Paola M.V., Rathod, Priti, Robinson, Esther, Rodger, Gillian, Rodrigues, Camilla, Rodwell, Timothy C., Roohi, Aysha, Santos-Lazaro, David, Shah, Sanchi, Kohl, Thomas Andreas, Smith, Grace A., Solano, Walter, Spitaleri, Andrea, Supply, Philip, Steyn, Adrie J.C., Surve, Utkarsha, Tahseen, Sabira, Thuong, Nguyen Thuy, Thwaites, Guy, Todt, Katharina, Trovato, Alberto

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Protein evolution in two co-occurring types of Symbiodinium: an exploration into the genetic basis of thermal tolerance in Symbiodinium clade D von Ladner, Jason T, Barshis, Daniel J, Palumbi, Stephen R

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Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms von Consortium, The Cryptic, Supply, Philip

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Lineage-Specific Transcriptional Profiles of Symbiodinium spp. Unaltered by Heat Stress in a Coral Host von Barshis, Daniel J., Ladner, Jason T., Oliver, Thomas A., Palumbi, Stephen R.

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Tracking virus outbreaks in the twenty-first century von Grubaugh, Nathan D., Ladner, Jason T., Lemey, Philippe, Pybus, Oliver G., Rambaut, Andrew, Holmes, Edward C., Andersen, Kristian G.

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First report of naturally infected Aedes aegypti with chikungunya virus genotype ECSA in the Americas von Costa-da-Silva, André Luis, Ioshino, Rafaella Sayuri, Petersen, Vivian, Lima, Antonio Fernando, Cunha, Marielton Dos Passos, Wiley, Michael R, Ladner, Jason T, Prieto, Karla, Palacios, Gustavo, Costa, Danuza Duarte, Suesdek, Lincoln, Zanotto, Paolo Marinho de Andrade, Capurro, Margareth Lara

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The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis von De Wit, Pierre, Pespeni, Melissa H., Ladner, Jason T., Barshis, Daniel J., Seneca, François, Jaris, Hannah, Therkildsen, Nina Overgaard, Morikawa, Megan, Palumbi, Stephen R.

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Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae) von Kuhn, Jens H, Wiley, Michael R, Rodriguez, Sergio E, Bào, Yīmíng, Prieto, Karla, Travassos da Rosa, Amelia P A, Guzman, Hilda, Savji, Nazir, Ladner, Jason T, Tesh, Robert B, Wada, Jiro, Jahrling, Peter B, Bente, Dennis A, Palacios, Gustavo

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Evolution and Spread of Ebola Virus in Liberia, 2014–2015 von Ladner, Jason T., Wiley, Michael R., Mate, Suzanne, Dudas, Gytis, Prieto, Karla, Lovett, Sean, Nagle, Elyse R., Beitzel, Brett, Gilbert, Merle L., Fakoli, Lawrence, Diclaro, Joseph W., Schoepp, Randal J., Fair, Joseph, Kuhn, Jens H., Hensley, Lisa E., Park, Daniel J., Sabeti, Pardis C., Rambaut, Andrew, Sanchez-Lockhart, Mariano, Bolay, Fatorma K., Kugelman, Jeffrey R., Palacios, Gustavo

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Virome-wide detection of natural infection events and the associated antibody dynamics using longitudinal highly-multiplexed serology von Kelley, Erin J., Henson, Sierra N., Rahee, Fatima, Boyle, Annalee S., Engelbrektson, Anna L., Nelson, Georgia A., Mead, Heather L., Anderson, N. Leigh, Razavi, Morteza, Yip, Richard, Ladner, Jason T., Scriba, Thomas J., Altin, John A.

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Emergence of Ebola Virus Escape Variants in Infected Nonhuman Primates Treated with the MB-003 Antibody Cocktail von Kugelman, Jeffrey R., Kugelman-Tonos, Johanny, Ladner, Jason T., Pettit, James, Keeton, Carolyn M., Nagle, Elyse R., Garcia, Karla Y., Froude, Jeffrey W., Kuehne, Ana I., Kuhn, Jens H., Bavari, Sina, Zeitlin, Larry, Dye, John M., Olinger, Gene G., Sanchez-Lockhart, Mariano, Palacios, Gustavo F.

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Persistence of Brucella abortus lineages revealed by genomic characterization and phylodynamic analysis von Suárez-Esquivel, Marcela, Hernández-Mora, Gabriela, Ruiz-Villalobos, Nazareth, Barquero-Calvo, Elías, Chacón-Díaz, Carlos, Ladner, Jason T, Oviedo-Sánchez, Gerardo, Foster, Jeffrey T, Rojas-Campos, Norman, Chaves-Olarte, Esteban, Thomson, Nicholas R, Moreno, Edgardo, Guzmán-Verri, Caterina

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Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone von Park, Daniel J., Dudas, Gytis, Wohl, Shirlee, Goba, Augustine, Whitmer, Shannon L.M., Andersen, Kristian G., Sealfon, Rachel S., Ladner, Jason T., Kugelman, Jeffrey R., Matranga, Christian B., Winnicki, Sarah M., Qu, James, Gire, Stephen K., Gladden-Young, Adrianne, Jalloh, Simbirie, Nosamiefan, Dolo, Yozwiak, Nathan L., Moses, Lina M., Jiang, Pan-Pan, Lin, Aaron E., Schaffner, Stephen F., Bird, Brian, Towner, Jonathan, Mamoh, Mambu, Gbakie, Michael, Kanneh, Lansana, Kargbo, David, Massally, James L.B., Kamara, Fatima K., Konuwa, Edwin, Sellu, Josephine, Jalloh, Abdul A., Mustapha, Ibrahim, Foday, Momoh, Yillah, Mohamed, Erickson, Bobbie R., Sealy, Tara, Blau, Dianna, Paddock, Christopher, Brault, Aaron, Amman, Brian, Basile, Jane, Bearden, Scott, Belser, Jessica, Bergeron, Eric, Campbell, Shelley, Chakrabarti, Ayan, Dodd, Kimberly, Flint, Mike, Gibbons, Aridth, Goodman, Christin, Klena, John, McMullan, Laura, Morgan, Laura, Russell, Brandy, Salzer, Johanna, Sanchez, Angela, Wang, David, Jungreis, Irwin, Tomkins-Tinch, Christopher, Kislyuk, Andrey, Lin, Michael F., Chapman, Sinead, MacInnis, Bronwyn, Matthews, Ashley, Bochicchio, James, Hensley, Lisa E., Kuhn, Jens H., Nusbaum, Chad, Schieffelin, John S., Birren, Bruce W., Forget, Marc, Nichol, Stuart T., Palacios, Gustavo F., Ndiaye, Daouda, Happi, Christian, Gevao, Sahr M., Vandi, Mohamed A., Kargbo, Brima, Holmes, Edward C., Bedford, Trevor, Gnirke, Andreas, Ströher, Ute, Rambaut, Andrew, Garry, Robert F., Sabeti, Pardis C.

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Travel Surveillance and Genomics Uncover a Hidden Zika Outbreak during the Waning Epidemic von Grubaugh, Nathan D., Saraf, Sharada, Gangavarapu, Karthik, Watts, Alexander, Tan, Amanda L., Oidtman, Rachel J., Ladner, Jason T., Oliveira, Glenn, Matteson, Nathaniel L., Kraemer, Moritz U.G., Vogels, Chantal B.F., Hentoff, Aaron, Bhatia, Deepit, Stanek, Danielle, Scott, Blake, Landis, Vanessa, Stryker, Ian, Cone, Marshall R., Kopp, Edgar W., Cannons, Andrew C., Heberlein-Larson, Lea, White, Stephen, Gillis, Leah D., Ricciardi, Michael J., Kwal, Jaclyn, Lichtenberger, Paola K., Magnani, Diogo M., Watkins, David I., Palacios, Gustavo, Hamer, Davidson H., Gardner, Lauren M., Perkins, T. Alex, Baele, Guy, Khan, Kamran, Morrison, Andrea, Isern, Sharon, Michael, Scott F., Andersen, Kristian G.

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