Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life von Wampach, Linda, Heintz-Buschart, Anna, Hogan, Angela, Muller, Emilie E L, Narayanasamy, Shaman, Laczny, Cedric C, Hugerth, Luisa W, Bindl, Lutz, Bottu, Jean, Andersson, Anders F, de Beaufort, Carine, Wilmes, Paul

Volltext

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance von Herold, Malte, Martínez Arbas, Susana, Narayanasamy, Shaman, Sheik, Abdul R., Kleine-Borgmann, Luise A. K., Lebrun, Laura A., Kunath, Benoît J., Roume, Hugo, Bessarab, Irina, Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, Christian, Hoopmann, Michael R., Moritz, Robert L., Ye, Yuzhen, Li, Sujun, Tang, Haixu, Heintz-Buschart, Anna, May, Patrick, Muller, Emilie E. L., Laczny, Cedric C., Wilmes, Paul

Volltext

The oral–gut microbiome axis in health and disease von Kunath, Benoit J., De Rudder, Charlotte, Laczny, Cedric C., Letellier, Elisabeth, Wilmes, Paul

Volltext

VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data von Laczny, Cedric C, Sternal, Tomasz, Plugaru, Valentin, Gawron, Piotr, Atashpendar, Arash, Margossian, Houry Hera, Coronado, Sergio, der Maaten, Laurens van, Vlassis, Nikos, Wilmes, Paul

Volltext

Alignment-free Visualization of Metagenomic Data by Nonlinear Dimension Reduction von Laczny, Cedric C., Pinel, Nicolás, Vlassis, Nikos, Wilmes, Paul

Volltext

Assessing the heterogeneity of in silico plasmid predictions based on whole-genome-sequenced clinical isolates von Laczny, Cedric C, Galata, Valentina, Plum, Achim, Posch, Andreas E, Keller, Andreas

Volltext

Routes of dispersion of antibiotic resistance genes from the poultry farm system von Scicchitano, Daniel, Babbi, Giulia, Palladino, Giorgia, Turroni, Silvia, Mekonnen, Yitagele Terefe, Laczny, Cédric, Wilmes, Paul, Leekitcharoenphon, Pimlapas, Castagnetti, Andrea, D'Amico, Federica, Brigidi, Patrizia, Savojardo, Castrense, Manfreda, Gerardo, Martelli, Pierluigi, De Cesare, Alessandra, Aarestrup, Frank Møller, Candela, Marco, Rampelli, Simone

Volltext

PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data von de Nies, Laura, Lopes, Sara, Busi, Susheel Bhanu, Galata, Valentina, Heintz-Buschart, Anna, Laczny, Cedric Christian, May, Patrick, Wilmes, Paul

Volltext

The gut microbiome molecular complex in human health and disease von Wilmes, Paul, Martin-Gallausiaux, Camille, Ostaszewski, Marek, Aho, Velma T.E., Novikova, Polina V., Laczny, Cédric C., Schneider, Jochen G.

Volltext

Identification, Recovery, and Refinement of Hitherto Undescribed Population-Level Genomes from the Human Gastrointestinal Tract von Laczny, Cedric C, Muller, Emilie E L, Heintz-Buschart, Anna, Herold, Malte, Lebrun, Laura A, Hogan, Angela, May, Patrick, de Beaufort, Carine, Wilmes, Paul

Volltext

miRTrail--a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases von Laczny, Cedric, Leidinger, Petra, Haas, Jan, Ludwig, Nicole, Backes, Christina, Gerasch, Andreas, Kaufmann, Michael, Vogel, Britta, Katus, Hugo A, Meder, Benjamin, Stähler, Cord, Meese, Eckart, Lenhof, Hans-Peter, Keller, Andreas

Volltext

Integrated meta-omic analyses of the gastrointestinal tract microbiome in patients undergoing allogeneic hematopoietic stem cell transplantation von Kaysen, Anne, Heintz-Buschart, Anna, Muller, Emilie E.L, Narayanasamy, Shaman, Wampach, Linda, Laczny, Cédric C, Graf, Norbert, Simon, Arne, Franke, Katharina, Bittenbring, Jörg, Wilmes, Paul, Schneider, Jochen G

Volltext

First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ von Muller, Emilie E L, Narayanasamy, Shaman, Zeimes, Myriam, Laczny, Cédric C, Lebrun, Laura A, Herold, Malte, Hicks, Nathan D, Gillece, John D, Schupp, James M, Keim, Paul, Wilmes, Paul

Volltext

SnapShot: The Expobiome Map von Aho, Velma T.E., Ostaszewski, Marek, Martin-Gallausiaux, Camille, Laczny, Cédric C., Schneider, Jochen G., Wilmes, Paul

Volltext

A 15-day pilot biodiversity intervention with horses in a farm system leads to gut microbiome rewilding in 10 urban Italian children von Scicchitano, Daniel, Foresto, Lucia, Laczny, Cédric C., Cinti, Nicoló, Vitagliano, Rosalba, Halder, Rashi, Morri, Gaja, Turroni, Silvia, D'Amico, Federica, Palladino, Giorgia, Fiori, Jessica, Wilmes, Paul, Rampelli, Simone, Candela, Marco

Volltext

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks von Roume, Hugo, Heintz-Buschart, Anna, Muller, Emilie E L, May, Patrick, Satagopam, Venkata P, Laczny, Cédric C, Narayanasamy, Shaman, Lebrun, Laura A, Hoopmann, Michael R, Schupp, James M, Gillece, John D, Hicks, Nathan D, Engelthaler, David M, Sauter, Thomas, Keim, Paul S, Moritz, Robert L, Wilmes, Paul

Volltext

Dispersion of antimicrobial resistant bacteria in pig farms and in the surrounding environment von Scicchitano, Daniel, Leuzzi, Daniela, Babbi, Giulia, Palladino, Giorgia, Turroni, Silvia, Laczny, Cédric Christian, Wilmes, Paul, Correa, Federico, Leekitcharoenphon, Pimlapas, Savojardo, Castrense, Luise, Diana, Martelli, Pierluigi, Trevisi, Paolo, Aarestrup, Frank Møller, Candela, Marco, Rampelli, Simone

Volltext

Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11,087 Clinical Isolates von Galata, Valentina, Laczny, Cédric C., Backes, Christina, Hemmrich-Stanisak, Georg, Schmolke, Susanne, Franke, Andre, Meese, Eckart, Herrmann, Mathias, von Müller, Lutz, Plum, Achim, Müller, Rolf, Stähler, Cord, Posch, Andreas E., Keller, Andreas

Volltext

Comparing genome versus proteome-based identification of clinical bacterial isolates von Galata, Valentina, Backes, Christina, Laczny, Cédric Christian, Hemmrich-Stanisak, Georg, Li, Howard, Smoot, Laura, Posch, Andreas Emanuel, Schmolke, Susanne, Bischoff, Markus, von Müller, Lutz, Plum, Achim, Franke, Andre, Keller, Andreas

Volltext

Functional meta-omics provide critical insights into long- and short-read assemblies von Galata, Valentina, Busi, Susheel Bhanu, Kunath, Benoit Josef, de Nies, Laura, Calusinska, Magdalena, Halder, Rashi, May, Patrick, Wilmes, Paul, Laczny, Cedric Christian

Volltext