Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis von Bull, Rowena A., Adikari, Thiruni N., Ferguson, James M., Hammond, Jillian M., Stevanovski, Igor, Beukers, Alicia G., Naing, Zin, Yeang, Malinna, Verich, Andrey, Gamaarachchi, Hasindu, Kim, Ki Wook, Luciani, Fabio, Stelzer-Braid, Sacha, Eden, John-Sebastian, Rawlinson, William D., van Hal, Sebastiaan J., Deveson, Ira W.

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High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes von Singh, Mandeep, Al-Eryani, Ghamdan, Carswell, Shaun, Ferguson, James M., Blackburn, James, Barton, Kirston, Roden, Daniel, Luciani, Fabio, Giang Phan, Tri, Junankar, Simon, Jackson, Katherine, Goodnow, Christopher C., Smith, Martin A., Swarbrick, Alexander

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GemSIM: general, error-model based simulator of next-generation sequencing data von McElroy, Kerensa E, Luciani, Fabio, Thomas, Torsten

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A Liver Capsular Network of Monocyte-Derived Macrophages Restricts Hepatic Dissemination of Intraperitoneal Bacteria by Neutrophil Recruitment von Sierro, Frederic, Evrard, Maximilien, Rizzetto, Simone, Melino, Michelle, Mitchell, Andrew J., Florido, Manuela, Beattie, Lynette, Walters, Shaun B., Tay, Szun Szun, Lu, Bo, Holz, Lauren E., Roediger, Ben, Wong, Yik Chun, Warren, Alessandra, Ritchie, William, McGuffog, Claire, Weninger, Wolfgang, Le Couteur, David G., Ginhoux, Florent, Britton, Warwick J., Heath, William R., Saunders, Bernadette M., McCaughan, Geoffrey W., Luciani, Fabio, MacDonald, Kelli P.A., Ng, Lai Guan, Bowen, David G., Bertolino, Patrick

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Lymphoma Driver Mutations in the Pathogenic Evolution of an Iconic Human Autoantibody von Singh, Mandeep, Jackson, Katherine J.L., Wang, Jing J., Schofield, Peter, Field, Matt A., Koppstein, David, Peters, Timothy J., Burnett, Deborah L., Rizzetto, Simone, Nevoltris, Damien, Masle-Farquhar, Etienne, Faulks, Megan L., Russell, Amanda, Gokal, Divya, Hanioka, Asami, Horikawa, Keisuke, Colella, Alexander D., Chataway, Timothy K., Blackburn, James, Mercer, Tim R., Langley, David B., Goodall, D. Margaret, Jefferis, Roy, Gangadharan Komala, Muralikrishna, Kelleher, Anthony D., Suan, Dan, Rischmueller, Maureen, Christ, Daniel, Brink, Robert, Luciani, Fabio, Gordon, Tom P., Goodnow, Christopher C., Reed, Joanne H.

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Atypical B cells are part of an alternative lineage of B cells that participates in responses to vaccination and infection in humans von Sutton, Henry J., Aye, Racheal, Idris, Azza H., Vistein, Rachel, Nduati, Eunice, Kai, Oscar, Mwacharo, Jedida, Li, Xi, Gao, Xin, Andrews, T. Daniel, Koutsakos, Marios, Nguyen, Thi H.O., Nekrasov, Maxim, Milburn, Peter, Eltahla, Auda, Berry, Andrea A., KC, Natasha, Chakravarty, Sumana, Sim, B. Kim Lee, Wheatley, Adam K., Kent, Stephen J., Hoffman, Stephen L., Lyke, Kirsten E., Bejon, Philip, Luciani, Fabio, Kedzierska, Katherine, Seder, Robert A., Ndungu, Francis M., Cockburn, Ian A.

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Clonally diverse CD38+HLA-DR+CD8+ T cells persist during fatal H7N9 disease von Wang, Zhongfang, Zhu, Lingyan, Nguyen, Thi H. O., Wan, Yanmin, Sant, Sneha, Quiñones-Parra, Sergio M., Crawford, Jeremy Chase, Eltahla, Auda A., Rizzetto, Simone, Bull, Rowena A., Qiu, Chenli, Koutsakos, Marios, Clemens, E. Bridie, Loh, Liyen, Chen, Tianyue, Liu, Lu, Cao, Pengxing, Ren, Yanqin, Kedzierski, Lukasz, Kotsimbos, Tom, McCaw, James M., La Gruta, Nicole L., Turner, Stephen J., Cheng, Allen C., Luciani, Fabio, Zhang, Xiaoyan, Doherty, Peter C., Thomas, Paul G., Xu, Jianqing, Kedzierska, Katherine

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Exploring and analysing single cell multi-omics data with VDJView von Samir, Jerome, Rizzetto, Simone, Gupta, Money, Luciani, Fabio

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Conserved epitopes with high HLA-I population coverage are targets of CD8+ T cells associated with high IFN-γ responses against all dengue virus serotypes von Adikari, Thiruni N., Di Giallonardo, Francesca, Leung, Preston, Grifoni, Alba, Sette, Alex, Weiskopf, Daniela, Bull, Rowena A., Luciani, Fabio

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Memory B cells are reactivated in subcapsular proliferative foci of lymph nodes von Moran, Imogen, Nguyen, Akira, Khoo, Weng Hua, Butt, Danyal, Bourne, Katherine, Young, Clara, Hermes, Jana R., Biro, Maté, Gracie, Gary, Ma, Cindy S., Munier, C. Mee Ling, Luciani, Fabio, Zaunders, John, Parker, Andrew, Kelleher, Anthony D., Tangye, Stuart G., Croucher, Peter I., Brink, Robert, Read, Mark N., Phan, Tri Giang

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Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection von Bull, Rowena A, Luciani, Fabio, McElroy, Kerensa, Gaudieri, Silvana, Pham, Son T, Chopra, Abha, Cameron, Barbara, Maher, Lisa, Dore, Gregory J, White, Peter A, Lloyd, Andrew R

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CAR+ and CAR− T cells share a differentiation trajectory into an NK-like subset after CD19 CAR T cell infusion in patients with B cell malignancies von Louie, Raymond Hall Yip, Cai, Curtis, Samir, Jerome, Singh, Mandeep, Deveson, Ira W., Ferguson, James M., Amos, Timothy G., McGuire, Helen Marie, Gowrishankar, Kavitha, Adikari, Thiruni, Balderas, Robert, Bonomi, Martina, Ruella, Marco, Bishop, David, Gottlieb, David, Blyth, Emily, Micklethwaite, Kenneth, Luciani, Fabio

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Viral quasispecies assembly via maximal clique enumeration von Töpfer, Armin, Marschall, Tobias, Bull, Rowena A, Luciani, Fabio, Schönhuth, Alexander, Beerenwinkel, Niko

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Higher abundance of enterovirus A species in the gut of children with islet autoimmunity von Kim, Ki Wook, Horton, Jessica L., Pang, Chi Nam Ignatius, Jain, Komal, Leung, Preston, Isaacs, Sonia R., Bull, Rowena A., Luciani, Fabio, Wilkins, Marc R., Catteau, Jacki, Lipkin, W. Ian, Rawlinson, William D., Briese, Thomas, Craig, Maria E.

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Cytotoxic T cells swarm by homotypic chemokine signalling von Galeano Niño, Jorge Luis, Pageon, Sophie V, Tay, Szun S, Colakoglu, Feyza, Kempe, Daryan, Hywood, Jack, Mazalo, Jessica K, Cremasco, James, Govendir, Matt A, Dagley, Laura F, Hsu, Kenneth, Rizzetto, Simone, Zieba, Jerzy, Rice, Gregory, Prior, Victoria, O'Neill, Geraldine M, Williams, Richard J, Nisbet, David R, Kramer, Belinda, Webb, Andrew I, Luciani, Fabio, Read, Mark N, Biro, Maté

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Broadly neutralizing antibodies from an individual that naturally cleared multiple hepatitis C virus infections uncover molecular determinants for E2 targeting and vaccine design von Keck, Zhen-Yong, Pierce, Brian G, Lau, Patrick, Lu, Janine, Wang, Yong, Underwood, Alexander, Bull, Rowena A, Prentoe, Jannick, Velázquez-Moctezuma, Rodrigo, Walker, Melanie R, Luciani, Fabio, Guest, Johnathan D, Fauvelle, Catherine, Baumert, Thomas F, Bukh, Jens, Lloyd, Andrew R, Foung, Steven K H

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Inhibitors of the Hepatitis C Virus Polymerase; Mode of Action and Resistance von Eltahla, Auda A, Luciani, Fabio, White, Peter A, Lloyd, Andrew R, Bull, Rowena A

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Hepatitis C treatment strategies in prisons: A cost-effectiveness analysis von Kwon, Jisoo A, Chambers, Georgina M, Luciani, Fabio, Zhang, Lei, Kinathil, Shamin, Kim, Dennis, Thein, Hla-Hla, Botha, Willings, Thompson, Sandra, Lloyd, Andrew, Yap, Lorraine, Gray, Richard T, Butler, Tony

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epidemiological fitness cost of drug resistance in Mycobacterium tuberculosis von Luciani, Fabio, Sisson, Scott A, Jiang, Honglin, Francis, Andrew R, Tanaka, Mark M

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Contribution of Intra- and Interhost Dynamics to Norovirus Evolution von BULL, Rowena A, EDEN, John-Sebastian, LUCIANI, Fabio, MCELROY, Kerensa, RAWLINSON, William D, WHITE, Peter A

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