Activation of the Receptor Tyrosine Kinase AXL Regulates the Immune Microenvironment in Glioblastoma von Sadahiro, Hirokazu, Kang, Kyung-Don, Gibson, Justin T, Minata, Mutsuko, Yu, Hai, Shi, Junfeng, Chhipa, Rishi, Chen, Zhihong, Lu, Songjian, Simoni, Yannick, Furuta, Takuya, Sabit, Hemragul, Zhang, Suojun, Bastola, Soniya, Yamaguchi, Shinobu, Alsheikh, Hebaallah, Komarova, Svetlana, Wang, Jun, Kim, Sung-Hak, Hambardzumyan, Dolores, Lu, Xinghua, Newell, Evan W, DasGupta, Biplab, Nakada, Mitsutoshi, Lee, L James, Nabors, Burt, Norian, Lyse A, Nakano, Ichiro

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MST4 Phosphorylation of ATG4B Regulates Autophagic Activity, Tumorigenicity, and Radioresistance in Glioblastoma von Huang, Tianzhi, Kim, Chung Kwon, Alvarez, Angel A., Pangeni, Rajendra P., Wan, Xuechao, Song, Xiao, Shi, Taiping, Yang, Yongyong, Sastry, Namratha, Horbinski, Craig M., Lu, Songjian, Stupp, Roger, Kessler, John A., Nishikawa, Ryo, Nakano, Ichiro, Sulman, Erik P., Lu, Xinghua, James, Charles David, Yin, Xiao-Ming, Hu, Bo, Cheng, Shi-Yuan

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Prediction of lncRNA-disease associations by integrating diverse heterogeneous information sources with RWR algorithm and positive pointwise mutual information von Fan, Xiao-Nan, Zhang, Shao-Wu, Zhang, Song-Yao, Zhu, Kunju, Lu, Songjian

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ORN: Inferring patient-specific dysregulation status of pathway modules in cancer with OR-gate Network von Liang, Lifan, Zhu, Kunju, Tao, Junyan, Lu, Songjian

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Phenotypic Plasticity of Invasive Edge Glioma Stem-like Cells in Response to Ionizing Radiation von Minata, Mutsuko, Audia, Alessandra, Shi, Junfeng, Lu, Songjian, Bernstock, Joshua, Pavlyukov, Marat S., Das, Arvid, Kim, Sung-Hak, Shin, Yong Jae, Lee, Yeri, Koo, Harim, Snigdha, Kirti, Waghmare, Indrayani, Guo, Xing, Mohyeldin, Ahmed, Gallego-Perez, Daniel, Wang, Jia, Chen, Dongquan, Cheng, Peng, Mukheef, Farah, Contreras, Minerva, Reyes, Joel F., Vaillant, Brian, Sulman, Erik P., Cheng, Shi-Yuan, Markert, James M., Tannous, Bakhos A., Lu, Xinghua, Kango-Singh, Madhuri, Lee, L. James, Nam, Do-Hyun, Nakano, Ichiro, Bhat, Krishna P.

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A novel method of using Deep Belief Networks and genetic perturbation data to search for yeast signaling pathways von Lu, Songjian, Fan, Xiaonan, Chen, Lujia, Lu, Xinghua

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Integrating data and knowledge to identify functional modules of genes: a multilayer approach von Liang, Lifan, Chen, Vicky, Zhu, Kunju, Fan, Xiaonan, Lu, Xinghua, Lu, Songjian

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A Fixed-Parameter Algorithm for the Directed Feedback Vertex Set Problem von CHEN, Jianer, YANG LIU, SONGJIAN LU, O'SULLIVAN, Barry, RAZGON, Igor

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An Improved Parameterized Algorithm for the Minimum Node Multiway Cut Problem von Chen, Jianer, Liu, Yang, Lu, Songjian

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A regulatory circuit of miR-125b/miR-20b and Wnt signalling controls glioblastoma phenotypes through FZD6-modulated pathways von Huang, Tianzhi, Alvarez, Angel A., Pangeni, Rajendra P., M. Horbinski, Craig, Lu, Songjian, Kim, Sung-Hak, James, C. David, J. Raizer, Jeffery, A. Kessler, John, Brenann, Cameron W., Sulman, Erik P., Finocchiaro, Gaetano, Tan, Ming, Nishikawa, Ryo, Lu, Xinghua, Nakano, Ichiro, Hu, Bo, Cheng, Shi-Yuan

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Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference von Cai, Chunhui, Cooper, Gregory F, Lu, Kevin N, Ma, Xiaojun, Xu, Shuping, Zhao, Zhenlong, Chen, Xueer, Xue, Yifan, Lee, Adrian V, Clark, Nathan, Chen, Vicky, Lu, Songjian, Chen, Lujia, Yu, Liyue, Hochheiser, Harry S, Jiang, Xia, Wang, Q Jane, Lu, Xinghua

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Tumour-specific Causal Inference Discovers Distinct Disease Mechanisms Underlying Cancer Subtypes von Xue, Yifan, Cooper, Gregory, Cai, Chunhui, Lu, Songjian, Hu, Baoli, Ma, Xiaojun, Lu, Xinghua

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GRWD1-WDR5-MLL2 Epigenetic Complex Mediates H3K4me3 Mark and Is Essential for Kaposi's Sarcoma-Associated Herpesvirus-Induced Cellular Transformation von Wei, Shan, Lu, Songjian, Liang, Lifan, Wang, Xian, Li, Wan, Li, Tingting, Chen, Luping, Ju, Enguo, Zhang, Xinquan, Lai, Zhao, Huang, Yufei, Lu, Xinghua, Gao, Shou-Jiang

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Identifying Driver Genomic Alterations in Cancers by Searching Minimum-Weight, Mutually Exclusive Sets von Lu, Songjian, Lu, Kevin N, Cheng, Shi-Yuan, Hu, Bo, Ma, Xiaojun, Nystrom, Nicholas, Lu, Xinghua

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Genome-wide methylomic and transcriptomic analyses identify subtype-specific epigenetic signatures commonly dysregulated in glioma stem cells and glioblastoma von Pangeni, Rajendra P., Zhang, Zhou, Alvarez, Angel A., Wan, Xuechao, Sastry, Namratha, Lu, Songjian, Shi, Taiping, Huang, Tianzhi, Lei, Charles X., James, C. David, Kessler, John A., Brennan, Cameron W., Nakano, Ichiro, Lu, Xinghua, Hu, Bo, Zhang, Wei, Cheng, Shi-Yuan

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From data towards knowledge: revealing the architecture of signaling systems by unifying knowledge mining and data mining of systematic perturbation data von Lu, Songjian, Jin, Bo, Cowart, L Ashley, Lu, Xinghua

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BEM: Mining Coregulation Patterns in Transcriptomics via Boolean Matrix Factorization von Liang, Lifan, Zhu, Kunju, Lu, Songjian

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Improved deterministic algorithms for weighted matching and packing problems von Chen, Jianer, Feng, Qilong, Liu, Yang, Lu, Songjian, Wang, Jianxin

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Greedy Localization and Color-Coding: Improved Matching and Packing Algorithms von Liu, Yang, Lu, Songjian, Chen, Jianer, Sze, Sing-Hoi

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The Role of Fibroblast Growth Factor 19 in Hepatocellular Carcinoma von Chen, Zhongguang, Jiang, Lili, Liang, Lifan, Koral, Kelly, Zhang, Qian, Zhao, Lei, Lu, Songjian, Tao, Junyan

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