tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences von Chan, Patricia P., Lowe, Todd M.

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tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes von Lowe, Todd M, Chan, Patricia P

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tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes von Chan, Patricia P, Lin, Brian Y, Mak, Allysia J, Lowe, Todd M

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GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes von Chan, Patricia P, Lowe, Todd M

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ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments von Cozen, Aaron E, Quartley, Erin, Holmes, Andrew D, Hrabeta-Robinson, Eva, Phizicky, Eric M, Lowe, Todd M

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R2DT is a framework for predicting and visualising RNA secondary structure using templates von Sweeney, Blake A., Hoksza, David, Nawrocki, Eric P., Ribas, Carlos Eduardo, Madeira, Fábio, Cannone, Jamie J., Gutell, Robin, Maddala, Aparna, Meade, Caeden D., Williams, Loren Dean, Petrov, Anton S., Chan, Patricia P., Lowe, Todd M., Finn, Robert D., Petrov, Anton I.

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tRNAviz: explore and visualize tRNA sequence features von Lin, Brian Y, Chan, Patricia P, Lowe, Todd M

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FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing von Salama, Sofie R, Underwood, Jason G, Uzilov, Andrew V, Katzman, Sol, Onodera, Courtney S, Mainzer, Jacob E, Mathews, David H, Lowe, Todd M, Haussler, David

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Predicting transfer RNA gene activity from sequence and genome context von Thornlow, Bryan P., Armstrong, Joel, Holmes, Andrew D., Howard, Jonathan M., Corbett-Detig, Russell B., Lowe, Todd M.

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The complete genome sequence of Haloferax volcanii DS2, a model archaeon von Hartman, Amber L, Norais, Cédric, Badger, Jonathan H, Delmas, Stéphane, Haldenby, Sam, Madupu, Ramana, Robinson, Jeffrey, Khouri, Hoda, Ren, Qinghu, Lowe, Todd M, Maupin-Furlow, Julie, Pohlschroder, Mecky, Daniels, Charles, Pfeiffer, Friedhelm, Allers, Thorsten, Eisen, Jonathan A

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ArxA, a new clade of arsenite oxidase within the DMSO reductase family of molybdenum oxidoreductases von Zargar, Kamrun, Conrad, Alison, Bernick, David L, Lowe, Todd M, Stolc, Viktor, Hoeft, Shelley, Oremland, Ronald S, Stolz, John, Saltikov, Chad W

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Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations von Qin, Wei, Amin, Shady A, Lundeen, Rachel A, Heal, Katherine R, Martens-Habbena, Willm, Turkarslan, Serdar, Urakawa, Hidetoshi, Costa, Kyle C, Hendrickson, Erik L, Wang, Tony, Beck, David AC, Tiquia-Arashiro, Sonia M, Taub, Fred, Holmes, Andrew D, Vajrala, Neeraja, Berube, Paul M, Lowe, Todd M, Moffett, James W, Devol, Allan H, Baliga, Nitin S, Arp, Daniel J, Sayavedra-Soto, Luis A, Hackett, Murray, Armbrust, E Virginia, Ingalls, Anitra E, Stahl, David A

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Mistranslating the genetic code with leucine in yeast and mammalian cells von Davey-Young, Josephine, Hasan, Farah, Tennakoon, Rasangi, Rozik, Peter, Moore, Henry, Hall, Peter, Cozma, Ecaterina, Genereaux, Julie, Hoffman, Kyle S, Chan, Patricia P, Lowe, Todd M, Brandl, Christopher J, O'Donoghue, Patrick

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The Complete Genome Sequence of Helicobacter pylori Strain G27 von Baltrus, David A, Amieva, Manuel R, Covacci, Antonello, Lowe, Todd M, Merrell, D Scott, Ottemann, Karen M, Stein, Markus, Salama, Nina R, Guillemin, Karen

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IscR is essential for yersinia pseudotuberculosis type III secretion and virulence von Miller, Halie K, Kwuan, Laura, Schwiesow, Leah, Bernick, David L, Mettert, Erin, Ramirez, Hector A, Ragle, James M, Chan, Patricia P, Kiley, Patricia J, Lowe, Todd M, Auerbuch, Victoria

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Draft De Novo Transcriptome of the Rat Kangaroo Potorous tridactylus as a Tool for Cell Biology von Udy, Dylan B, Voorhies, Mark, Chan, Patricia P, Lowe, Todd M, Dumont, Sophie

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Discovery of permuted and recently split transfer RNAs in Archaea von Chan, Patricia P, Cozen, Aaron E, Lowe, Todd M

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Distinct Stress‐Dependent Signatures of Cellular and Extracellular tRNA‐Derived Small RNAs von Li, Guoping, Manning, Aidan C., Bagi, Alex, Yang, Xinyu, Gokulnath, Priyanka, Spanos, Michail, Howard, Jonathan, Chan, Patricia P., Sweeney, Thadryan, Kitchen, Robert, Li, Haobo, Laurent, Brice D., Aranki, Sary F., Kontaridis, Maria I., Laurent, Louise C., Van Keuren‐Jensen, Kendall, Muehlschlegel, Jochen, Lowe, Todd M., Das, Saumya

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GtRNAdb: a database of transfer RNA genes detected in genomic sequence von Chan, Patricia P, Lowe, Todd M

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A Computational Screen for Methylation Guide snoRNAs in Yeast von Lowe, Todd M., Eddy, Sean R.

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