Mutation Accumulation in an Asexual Relative of Arabidopsis von Lovell, John T, Williamson, Robert J, Wright, Stephen I, McKay, John K, Sharbel, Timothy F

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The road to accurate and complete human genomes von Lovell, John T, Grimwood, Jane

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The first complete human genome von Lovell, John T., Grimwood, Jane

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GENESPACE tracks regions of interest and gene copy number variation across multiple genomes von Lovell, John T, Sreedasyam, Avinash, Schranz, M Eric, Wilson, Melissa, Carlson, Joseph W, Harkess, Alex, Emms, David, Goodstein, David M, Schmutz, Jeremy

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Host genotype controls ecological change in the leaf fungal microbiome von VanWallendael, Acer, Benucci, Gian Maria Niccolo, da Costa, Pedro Beschoren, Fraser, Linnea, Sreedasyam, Avinash, Fritschi, Felix, Juenger, Thomas E, Lovell, John T, Bonito, Gregory, Lowry, David B

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Transcriptome analysis under pecan scab infection reveals the molecular mechanisms of the defense response in pecans von Bhattarai, Gaurab, Rhein, Hormat Shadgou, Sreedasyam, Avinash, Lovell, John T, Khanal, Sameer, Grimwood, Jane, Schmutz, Jeremy, Jenkins, Jerry, Chee, Peng W, Pisani, Cristina, Randall, Jennifer, Conner, Patrick J

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A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci von Mamidi, Sujan, Healey, Adam, Huang, Pu, Grimwood, Jane, Jenkins, Jerry, Barry, Kerrie, Sreedasyam, Avinash, Shu, Shengqiang, Lovell, John T., Feldman, Maximilian, Wu, Jinxia, Yu, Yunqing, Chen, Cindy, Johnson, Jenifer, Sakakibara, Hitoshi, Kiba, Takatoshi, Sakurai, Tetsuya, Tavares, Rachel, Nusinow, Dmitri A., Baxter, Ivan, Schmutz, Jeremy, Brutnell, Thomas P., Kellogg, Elizabeth A.

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Genetic mapping of adaptation reveals fitness tradeoffs in Arabidopsis thaliana von Ågren, Jon, Oakley, Christopher G., McKay, John K., Lovell, John T., Schemske, Douglas W.

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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom von Sreedasyam, Avinash, Plott, Christopher, Hossain, Md Shakhawat, Lovell, John T, Grimwood, Jane, Jenkins, Jerry W, Daum, Christopher, Barry, Kerrie, Carlson, Joseph, Shu, Shengqiang, Phillips, Jeremy, Amirebrahimi, Mojgan, Zane, Matthew, Wang, Mei, Goodstein, David, Haas, Fabian B, Hiss, Manuel, Perroud, Pierre-François, Jawdy, Sara S, Yang, Yongil, Hu, Rongbin, Johnson, Jenifer, Kropat, Janette, Gallaher, Sean D, Lipzen, Anna, Shakirov, Eugene V, Weng, Xiaoyu, Torres-Jerez, Ivone, Weers, Brock, Conde, Daniel, Pappas, Marilia R, Liu, Lifeng, Muchlinski, Andrew, Jiang, Hui, Shyu, Christine, Huang, Pu, Sebastian, Jose, Laiben, Carol, Medlin, Alyssa, Carey, Sankalpi, Carrell, Alyssa A, Chen, Jin-Gui, Perales, Mariano, Swaminathan, Kankshita, Allona, Isabel, Grattapaglia, Dario, Cooper, Elizabeth A, Tholl, Dorothea, Vogel, John P, Weston, David J, Yang, Xiaohan, Brutnell, Thomas P, Kellogg, Elizabeth A, Baxter, Ivan, Udvardi, Michael, Tang, Yuhong, Mockler, Todd C, Juenger, Thomas E, Mullet, John, Rensing, Stefan A, Tuskan, Gerald A, Merchant, Sabeeha S, Stacey, Gary, Schmutz, Jeremy

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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding von Lovell, John T., Bentley, Nolan B., Bhattarai, Gaurab, Jenkins, Jerry W., Sreedasyam, Avinash, Alarcon, Yanina, Bock, Clive, Boston, Lori Beth, Carlson, Joseph, Cervantes, Kimberly, Clermont, Kristen, Duke, Sara, Krom, Nick, Kubenka, Keith, Mamidi, Sujan, Mattison, Christopher P., Monteros, Maria J., Pisani, Cristina, Plott, Christopher, Rajasekar, Shanmugam, Rhein, Hormat Shadgou, Rohla, Charles, Song, Mingzhou, Hilaire, Rolston St, Shu, Shengqiang, Wells, Lenny, Webber, Jenell, Heerema, Richard J., Klein, Patricia E., Conner, Patrick, Wang, Xinwang, Grauke, L. J., Grimwood, Jane, Schmutz, Jeremy, Randall, Jennifer J.

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Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass von Lovell, John T., MacQueen, Alice H., Mamidi, Sujan, Bonnette, Jason, Jenkins, Jerry, Napier, Joseph D., Sreedasyam, Avinash, Healey, Adam, Session, Adam, Shu, Shengqiang, Barry, Kerrie, Bonos, Stacy, Boston, LoriBeth, Daum, Christopher, Deshpande, Shweta, Ewing, Aren, Grabowski, Paul P., Haque, Taslima, Harrison, Melanie, Jiang, Jiming, Kudrna, Dave, Lipzen, Anna, Pendergast, Thomas H., Plott, Chris, Qi, Peng, Saski, Christopher A., Shakirov, Eugene V., Sims, David, Sharma, Manoj, Sharma, Rita, Stewart, Ada, Singan, Vasanth R., Tang, Yuhong, Thibivillier, Sandra, Webber, Jenell, Weng, Xiaoyu, Williams, Melissa, Wu, Guohong Albert, Yoshinaga, Yuko, Zane, Matthew, Zhang, Li, Zhang, Jiyi, Behrman, Kathrine D., Boe, Arvid R., Fay, Philip A., Fritschi, Felix B., Jastrow, Julie D., Lloyd-Reilley, John, Martínez-Reyna, Juan Manuel, Matamala, Roser, Mitchell, Robert B., Rouquette, Francis M., Ronald, Pamela, Saha, Malay, Tobias, Christian M., Udvardi, Michael, Wing, Rod A., Wu, Yanqi, Bartley, Laura E., Casler, Michael, Devos, Katrien M., Lowry, David B., Rokhsar, Daniel S., Grimwood, Jane, Juenger, Thomas E., Schmutz, Jeremy

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The genomic landscape of molecular responses to natural drought stress in Panicum hallii von Lovell, John T., Jenkins, Jerry, Lowry, David B., Mamidi, Sujan, Sreedasyam, Avinash, Weng, Xiaoyu, Barry, Kerrie, Bonnette, Jason, Campitelli, Brandon, Daum, Chris, Gordon, Sean P., Gould, Billie A., Khasanova, Albina, Lipzen, Anna, MacQueen, Alice, Palacio-Mejía, Juan Diego, Plott, Christopher, Shakirov, Eugene V., Shu, Shengqiang, Yoshinaga, Yuko, Zane, Matt, Kudrna, Dave, Talag, Jason D., Rokhsar, Daniel, Grimwood, Jane, Schmutz, Jeremy, Juenger, Thomas E.

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Drought adaptation in Arabidopsis thaliana by extensive genetic loss-of-function von Monroe, J Grey, Powell, Tyler, Price, Nicholas, Mullen, Jack L, Howard, Anne, Evans, Kyle, Lovell, John T, McKay, John K

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Field-based high throughput phenotyping rapidly identifies genomic regions controlling yield components in rice von Tanger, Paul, Klassen, Stephen, Mojica, Julius P., Lovell, John T., Moyers, Brook T., Baraoidan, Marietta, Naredo, Maria Elizabeth B., McNally, Kenneth L., Poland, Jesse, Bush, Daniel R., Leung, Hei, Leach, Jan E., McKay, John K.

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Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta von Wang, Baosheng, Mojica, Julius P, Perera, Nadeesha, Lee, Cheng-Ruei, Lovell, John T, Sharma, Aditi, Adam, Catherine, Lipzen, Anna, Barry, Kerrie, Rokhsar, Daniel S, Schmutz, Jeremy, Mitchell-Olds, Thomas

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Dynamic genome evolution in a model fern von Marchant, D. Blaine, Chen, Guang, Cai, Shengguan, Chen, Fei, Schafran, Peter, Jenkins, Jerry, Shu, Shengqiang, Plott, Chris, Webber, Jenell, Lovell, John T., He, Guifen, Sandor, Laura, Williams, Melissa, Rajasekar, Shanmugam, Healey, Adam, Barry, Kerrie, Zhang, Yinwen, Sessa, Emily, Dhakal, Rijan R., Wolf, Paul G., Harkess, Alex, Li, Fay-Wei, Rössner, Clemens, Becker, Annette, Gramzow, Lydia, Xue, Dawei, Wu, Yuhuan, Tong, Tao, Wang, Yuanyuan, Dai, Fei, Hua, Shuijin, Wang, Hua, Xu, Shengchun, Xu, Fei, Duan, Honglang, Theißen, Günter, McKain, Michael R., Li, Zheng, McKibben, Michael T. W., Barker, Michael S., Schmitz, Robert J., Stevenson, Dennis W., Zumajo-Cardona, Cecilia, Ambrose, Barbara A., Leebens-Mack, James H., Grimwood, Jane, Schmutz, Jeremy, Soltis, Pamela S., Soltis, Douglas E., Chen, Zhong-Hua

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Biosynthesis and Emission of Stress-Induced Volatile Terpenes in Roots and Leaves of Switchgrass (Panicum virgatum L.) von Muchlinski, Andrew, Chen, Xinlu, Lovell, John T., Köllner, Tobias G., Pelot, Kyle A., Zerbe, Philipp, Ruggiero, Meredith, Callaway, LeMar, Laliberte, Suzanne, Chen, Feng, Tholl, Dorothea

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Natural variation in plant telomere length is associated with flowering time von Choi, Jae Young, Abdulkina, Liliia R., Yin, Jun, Chastukhina, Inna B., Lovell, John T., Agabekian, Irma A., Young, Pierce G., Razzaque, Samsad, Shippen, Dorothy E., Juenger, Thomas E., Shakirov, Eugene, Purugganan, Michael D.

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Hybrid apomicts trapped in the ecological niches of their sexual ancestors von Mau, Martin, Lovell, John T., Corral, José M., Kiefer, Christiane, Koch, Marcus A., Aliyu, Olawale M., Sharbel, Timothy F.

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Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium von Scarlett, Virginia T, Lovell, John T, Shao, Mingqin, Phillips, Jeremy, Shu, Shengqiang, Lusinska, Joanna, Goodstein, David M, Jenkins, Jerry, Grimwood, Jane, Barry, Kerrie, Chalhoub, Boulos, Schmutz, Jeremy, Hasterok, Robert, Catalán, Pilar, Vogel, John P

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