Interplay between chromatin marks in development and disease von Janssen, Sanne M., Lorincz, Matthew C.

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Long Terminal Repeats: From Parasitic Elements to Building Blocks of the Transcriptional Regulatory Repertoire von Thompson, Peter J., Macfarlan, Todd S., Lorincz, Matthew C.

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NSD1-deposited H3K36me2 directs de novo methylation in the mouse male germline and counteracts Polycomb-associated silencing von Shirane, Kenjiro, Miura, Fumihito, Ito, Takashi, Lorincz, Matthew C.

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Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET von Lorincz, Matthew C, Shinkai, Yoichi, Matsui, Toshiyuki, Leung, Danny, Miyashita, Hiroki, Maksakova, Irina A, Miyachi, Hitoshi, Kimura, Hiroshi, Tachibana, Makoto

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An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations von Brind’Amour, Julie, Liu, Sheng, Hudson, Matthew, Chen, Carol, Karimi, Mohammad M., Lorincz, Matthew C.

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SETD2 regulates the maternal epigenome, genomic imprinting and embryonic development von Xu, Qianhua, Xiang, Yunlong, Wang, Qiujun, Wang, Leyun, Brind’Amour, Julie, Bogutz, Aaron Blair, Zhang, Yu, Zhang, Bingjie, Yu, Guang, Xia, Weikun, Du, Zhenhai, Huang, Chunyi, Ma, Jing, Zheng, Hui, Li, Yuanyuan, Liu, Chao, Walker, Cheryl Lyn, Jonasch, Eric, Lefebvre, Louis, Wu, Min, Lorincz, Matthew C., Li, Wei, Li, Li, Xie, Wei

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DNA Methylation and SETDB1/H3K9me3 Regulate Predominantly Distinct Sets of Genes, Retroelements, and Chimeric Transcripts in mESCs von Karimi, Mohammad M., Goyal, Preeti, Maksakova, Irina A., Bilenky, Misha, Leung, Danny, Tang, Jie Xin, Shinkai, Yoichi, Mager, Dixie L., Jones, Steven, Hirst, Martin, Lorincz, Matthew C.

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Setdb1 is required for germline development and silencing of H3K9me3-marked endogenous retroviruses in primordial germ cells von Liu, Sheng, Brind'Amour, Julie, Karimi, Mohammad M, Shirane, Kenjiro, Bogutz, Aaron, Lefebvre, Louis, Sasaki, Hiroyuki, Shinkai, Yoichi, Lorincz, Matthew C

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Vertebrate diapause preserves organisms long term through Polycomb complex members von Hu, Chi-Kuo, Wang, Wei, Brind'Amour, Julie, Singh, Param Priya, Reeves, G. Adam, Lorincz, Matthew C., Alvarado, Alejandro Sanchez, Brunet, Anne

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Systematic Identification of Factors for Provirus Silencing in Embryonic Stem Cells von Yang, Bin Xia, EL Farran, Chadi A., Guo, Hong Chao, Yu, Tao, Fang, Hai Tong, Wang, Hao Fei, Schlesinger, Sharon, Seah, Yu Fen Samantha, Goh, Germaine Yen Lin, Neo, Suat Peng, Li, Yinghui, Lorincz, Matthew C., Tergaonkar, Vinay, Lim, Tit-Meng, Chen, Lingyi, Gunaratne, Jayantha, Collins, James J., Goff, Stephen P., Daley, George Q., Li, Hu, Bard, Frederic A., Loh, Yuin-Han

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LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation von Brind’Amour, Julie, Kobayashi, Hisato, Richard Albert, Julien, Shirane, Kenjiro, Sakashita, Akihiko, Kamio, Asuka, Bogutz, Aaron, Koike, Tasuku, Karimi, Mohammad M., Lefebvre, Louis, Kono, Tomohiro, Lorincz, Matthew C.

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Activation of Endogenous Retroviruses in Dnmt1−/− ESCs Involves Disruption of SETDB1-Mediated Repression by NP95 Binding to Hemimethylated DNA von Sharif, Jafar, Endo, Takaho A., Nakayama, Manabu, Karimi, Mohammad M., Shimada, Midori, Katsuyama, Kayoko, Goyal, Preeti, Brind’Amour, Julie, Sun, Ming-An, Sun, Zhixiong, Ishikura, Tomoyuki, Mizutani-Koseki, Yoko, Ohara, Osamu, Shinkai, Yoichi, Nakanishi, Makoto, Xie, Hehuang, Lorincz, Matthew C., Koseki, Haruhiko

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Histone H3K9 Methyltransferase G9a in Oocytes Is Essential for Preimplantation Development but Dispensable for CG Methylation Protection von Au Yeung, Wan Kin, Brind’Amour, Julie, Hatano, Yu, Yamagata, Kazuo, Feil, Robert, Lorincz, Matthew C., Tachibana, Makoto, Shinkai, Yoichi, Sasaki, Hiroyuki

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Evolution of imprinting via lineage-specific insertion of retroviral promoters von Bogutz, Aaron B., Brind’Amour, Julie, Kobayashi, Hisato, Jensen, Kristoffer N., Nakabayashi, Kazuhiko, Imai, Hiroo, Lorincz, Matthew C., Lefebvre, Louis

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Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells von Lorincz, Matthew C, Dickerson, David R, Schmitt, Mike, Groudine, Mark

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Repression of germline genes by PRC1.6 and SETDB1 in the early embryo precedes DNA methylation-mediated silencing von Mochizuki, Kentaro, Sharif, Jafar, Shirane, Kenjiro, Uranishi, Kousuke, Bogutz, Aaron B., Janssen, Sanne M., Suzuki, Ayumu, Okuda, Akihiko, Koseki, Haruhiko, Lorincz, Matthew C.

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hnRNP K coordinates transcriptional silencing by SETDB1 in embryonic stem cells von Thompson, Peter J, Dulberg, Vered, Moon, Kyung-Mee, Foster, Leonard J, Chen, Carol, Karimi, Mohammad M, Lorincz, Matthew C

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Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms von Rebollo, Rita, Karimi, Mohammad M, Bilenky, Misha, Gagnier, Liane, Miceli-Royer, Katharine, Zhang, Ying, Goyal, Preeti, Keane, Thomas M, Jones, Steven, Hirst, Martin, Lorincz, Matthew C, Mager, Dixie L

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Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1 von Leung, Danny, Du, Tingting, Wagner, Ulrich, Xie, Wei, Lee, Ah Young, Goyal, Preeti, Li, Yujing, Szulwach, Keith E., Jin, Peng, Lorincz, Matthew C., Ren, Bing

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ZFP57 regulation of transposable elements and gene expression within and beyond imprinted domains von Shi, Hui, Strogantsev, Ruslan, Takahashi, Nozomi, Kazachenka, Anastasiya, Lorincz, Matthew C, Hemberger, Myriam, Ferguson-Smith, Anne C

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