Web Resources for HIV Type 1 Genotypic-Resistance Test Interpretation von Liu, Tommy F., Shafer, Robert W.

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Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update von Bennett, Diane E, Camacho, Ricardo J, Otelea, Dan, Kuritzkes, Daniel R, Fleury, Hervé, Kiuchi, Mark, Heneine, Walid, Kantor, Rami, Jordan, Michael R, Schapiro, Jonathan M, Vandamme, Anne-Mieke, Sandstrom, Paul, Boucher, Charles A B, van de Vijver, David, Rhee, Soo-Yon, Liu, Tommy F, Pillay, Deenan, Shafer, Robert W

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Automating HIV Drug Resistance Genotyping with RECall, a Freely Accessible Sequence Analysis Tool von WOODS, Conan K, BRUMME, Chanson J, LIU, Tommy F, CHUI, Celia K. S, CHU, Anna L, WYNHOVEN, Brian, HALL, Tom A, TREVINO, Christina, SHAFER, Robert W, HARRIGAN, P. Richard

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The HIVdb System for HIV-1 Genotypic Resistance Interpretation von Tang, Michele W., Liu, Tommy F., Shafer, Robert W.

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Non-nucleoside reverse transcriptase inhibitor (NNRTI) cross-resistance: implications for preclinical evaluation of novel NNRTIs and clinical genotypic resistance testing von Melikian, George L, Rhee, Soo-Yon, Varghese, Vici, Porter, Danielle, White, Kirsten, Taylor, Jonathan, Towner, William, Troia, Paolo, Burack, Jeffrey, Dejesus, Edwin, Robbins, Gregory K, Razzeca, Kristin, Kagan, Ron, Liu, Tommy F, Fessel, W Jeffrey, Israelski, Dennis, Shafer, Robert W

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The calibrated population resistance tool: standardized genotypic estimation of transmitted HIV-1 drug resistance von Gifford, Robert J., Liu, Tommy F., Rhee, Soo-Yon, Kiuchi, Mark, Hue, Stephane, Pillay, Deenan, Shafer, Robert W.

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Trends in Genotypic HIV-1 Antiretroviral Resistance between 2006 and 2012 in South African Patients Receiving First- and Second-Line Antiretroviral Treatment Regimens von Van Zyl, Gert U, Liu, Tommy F, Claassen, Mathilda, Engelbrecht, Susan, de Oliveira, Tulio, Preiser, Wolfgang, Wood, Natasha T, Travers, Simon, Shafer, Robert W

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Natural variation of HIV-1 group M integrase: implications for a new class of antiretroviral inhibitors von Rhee, Soo-Yon, Liu, Tommy F, Kiuchi, Mark, Zioni, Rafael, Gifford, Robert J, Holmes, Susan P, Shafer, Robert W

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Similar prevalence of low-abundance drug-resistant variants in treatment-naive patients with genotype 1a and 1b hepatitis C virus infections as determined by ultradeep pyrosequenci... von Margeridon-Thermet, Severine, Le Pogam, Sophie, Li, Lewyn, Liu, Tommy F, Shulman, Nancy, Shafer, Robert W, Najera, Isabel

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Minority Human Immunodeficiency Virus Type 1 Variants in Antiretroviral-Naive Persons with Reverse Transcriptase Codon 215 Revertant Mutations von MITSUYA, Yumi, VARGHESE, Vici, SHAFER, Robert W, CHUNLIN WANG, LIU, Tommy F, HOLMES, Susan P, JAYAKUMAR, Prerana, GHARIZADEH, Baback, RONAGHI, Mostafa, KLEIN, Daniel, FESSEL, W. Jeffrey

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HIV-1 subtype B protease and reverse transcriptase amino acid covariation von Rhee, Soo-Yon, Liu, Tommy F, Holmes, Susan P, Shafer, Robert W

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Prototypical Recombinant Multi-Protease-Inhibitor-Resistant Infectious Molecular Clones of Human Immunodeficiency Virus Type 1 von VARGHESE, Vici, MITSUYA, Yumi, FESSEL, W. Jeffrey, LIU, Tommy F, MELIKIAN, George L, KATZENSTEIN, David A, SCHIFFER, Celia A, HOLMES, Susan P, SHAFER, Robert W

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Low-Level Persistence of Drug Resistance Mutations in Hepatitis B Virus-Infected Subjects with a Past History of Lamivudine Treatment von Margeridon-Thermet, Severine, Svarovskaia, Evguenia S, Babrzadeh, Farbod, Martin, Ross, Liu, Tommy F, Pacold, Mary, Reuman, Elizabeth C, Holmes, Susan P, Borroto-Esoda, Katyna, Shafer, Robert W

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Predictive Value of HIV-1 Genotypic Resistance Test Interpretation Algorithms von Rhee, Soo-Yon, Fessel, W. Jeffrey, Liu, Tommy F., Marlowe, Natalia M., Rowland, Charles M., Rode, Richard A., Vandamme, Anne-Mieke, Van Laethem, Kristel, Brun-Vezinet, Françoise, Calvez, Vincent, Taylor, Jonathan, Hurley, Leo, Horberg, Michael, Shafer, Robert W.

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Nonpolymorphic Human Immunodeficiency Virus Type 1 Protease and Reverse Transcriptase Treatment-Selected Mutations von SHAHRIAR, Rajin, RHEE, Soo-Yon, LIU, Tommy F, FESSEL, W. Jeffrey, SCARSELLA, Anthony, TOWNER, William, HOLMES, Susan P, ZOLOPA, Andrew R, SHAFER, Robert W

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Prevalence of Darunavir Resistance-Associated Mutations: Patterns of Occurrence and Association with Past Treatment von Mitsuya, Yumi, Liu, Tommy F., Rhee, Soo-Yon, Fessel, W. Jeffrey, Shafer, Robert W.

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Standardized representation, visualization and searchable repository of antiretroviral treatment-change episodes von Rhee, Soo-Yon, Blanco, Jose Luis, Liu, Tommy F, Pere, Iñaki, Kaiser, Rolf, Zazzi, Maurizio, Incardona, Francesca, Towner, William, Gatell, Josep Maria, De Luca, Andrea, Fessel, W Jeffrey, Shafer, Robert W

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Hepatitis B virus reverse transcriptase sequence variant database for sequence analysis and mutation discovery von Rhee, Soo-Yon, Margeridon-Thermet, Severine, Nguyen, Mindie H., Liu, Tommy F., Kagan, Ron M., Beggel, Bastian, Verheyen, Jens, Kaiser, Rolf, Shafer, Robert W.

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Collinearity of protease mutations in HIV-1 samples with high-level protease inhibitor class resistance von Babrzadeh, Farbod, Varghese, Vici, Pacold, Mary, Liu, Tommy F, Nyrén, Pål, Schiffer, Celia, Fessel, W Jeffrey, Shafer, Robert W

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HIV-1 Integrase Sequence Variability in Antiretroviral Naïve Patients and in Triple-Class Experienced Patients Subsequently Treated with Raltegravir von VARGHESE, Vici, LIU, Tommy F, RHEE, Soo-Yon, LIBIRAN, Paolo, TREVINO, Christina, FESSEL, W. Jeffrey, SHAFER, Robert W

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