Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION von Nakane, Takanori, Kimanius, Dari, Lindahl, Erik, Scheres, Sjors Hw

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Gentle and fast all-atom model refinement to cryo-EM densities via a maximum likelihood approach von Blau, Christian, Yvonnesdotter, Linnea, Lindahl, Erik

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Improved model quality assessment using ProQ2 von Ray, Arjun, Lindahl, Erik, Wallner, Björn

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Heterogeneous parallelization and acceleration of molecular dynamics simulations in GROMACS von Páll, Szilárd, Zhmurov, Artem, Bauer, Paul, Abraham, Mark, Lundborg, Magnus, Gray, Alan, Hess, Berk, Lindahl, Erik

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GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation von Hess, Berk, Kutzner, Carsten, van der Spoel, David, Lindahl, Erik

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New tools for automated high-resolution cryo-EM structure determination in RELION-3 von Zivanov, Jasenko, Nakane, Takanori, Forsberg, Björn O, Kimanius, Dari, Hagen, Wim Jh, Lindahl, Erik, Scheres, Sjors Hw

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GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers von Abraham, Mark James, Murtola, Teemu, Schulz, Roland, Páll, Szilárd, Smith, Jeremy C., Hess, Berk, Lindahl, Erik

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Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2 von Kimanius, Dari, Forsberg, Björn O, Scheres, Sjors Hw, Lindahl, Erik

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GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit von Pronk, Sander, Páll, Szilárd, Schulz, Roland, Larsson, Per, Bjelkmar, Pär, Apostolov, Rossen, Shirts, Michael R, Smith, Jeremy C, Kasson, Peter M, van der Spoel, David, Hess, Berk, Lindahl, Erik

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Structural and dynamic mechanisms of GABAA receptor modulators with opposing activities von Zhu, Shaotong, Sridhar, Akshay, Teng, Jinfeng, Howard, Rebecca J., Lindahl, Erik, Hibbs, Ryan E.

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Symmetry-adapted Markov state models of closing, opening, and desensitizing in α 7 nicotinic acetylcholine receptors von Zhuang, Yuxuan, Howard, Rebecca J., Lindahl, Erik

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Implementation of the CHARMM Force Field in GROMACS: Analysis of Protein Stability Effects from Correction Maps, Virtual Interaction Sites, and Water Models von Bjelkmar, Pär, Larsson, Per, Cuendet, Michel A, Hess, Berk, Lindahl, Erik

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Prediction and validation of protein intermediate states from structurally rich ensembles and coarse-grained simulations von Orellana, Laura, Yoluk, Ozge, Carrillo, Oliver, Orozco, Modesto, Lindahl, Erik

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Divergent mechanisms of steroid inhibition in the human ρ1 GABAA receptor von Fan, Chen, Cowgill, John, Howard, Rebecca J., Lindahl, Erik

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Unraveling the strokes of ion channel molecular machines in computers von Lindahl, Erik

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Crystal Structure of Na⁺, K⁺-ATPase in the Na⁺-Bound State von Nyblom, Maria, Poulsen, Hanne, Gourdon, Pontus, Reinhard, Linda, Andersson, Magnus, Lindahl, Erik, Fedosova, Natalya, Nissen, Poul

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Lennard-Jones Lattice Summation in Bilayer Simulations Has Critical Effects on Surface Tension and Lipid Properties von Wennberg, Christian L, Murtola, Teemu, Hess, Berk, Lindahl, Erik

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Direct-Space Corrections Enable Fast and Accurate Lorentz–Berthelot Combination Rule Lennard-Jones Lattice Summation von Wennberg, Christian L., Murtola, Teemu, Páll, Szilárd, Abraham, Mark J., Hess, Berk, Lindahl, Erik

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GROMACS: Fast, flexible, and free von Van Der Spoel, David, Lindahl, Erik, Hess, Berk, Groenhof, Gerrit, Mark, Alan E., Berendsen, Herman J. C.

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Structural insights into opposing actions of neurosteroids on GABAA receptors von Legesse, Dagimhiwat H., Fan, Chen, Teng, Jinfeng, Zhuang, Yuxuan, Howard, Rebecca J., Noviello, Colleen M., Lindahl, Erik, Hibbs, Ryan E.

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