Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis von Du, Pan, Zhang, Xiao, Huang, Chiang-Ching, Jafari, Nadereh, Kibbe, Warren A, Hou, Lifang, Lin, Simon M

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ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data von Zhu, Lihua J, Gazin, Claude, Lawson, Nathan D, Pagès, Hervé, Lin, Simon M, Lapointe, David S, Green, Michael R

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Graph embedding on biomedical networks: methods, applications and evaluations von Yue, Xiang, Wang, Zhen, Huang, Jingong, Parthasarathy, Srinivasan, Moosavinasab, Soheil, Huang, Yungui, Lin, Simon M, Zhang, Wen, Zhang, Ping, Sun, Huan

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Reflected entropy in random tensor networks von Akers, Chris, Faulkner, Thomas, Lin, Simon, Rath, Pratik

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The Page curve for reflected entropy von Akers, Chris, Faulkner, Thomas, Lin, Simon, Rath, Pratik

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lumi: a pipeline for processing Illumina microarray von Du, Pan, Kibbe, Warren A., Lin, Simon M.

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Digital Health

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Pyridine alkaloids with activity in the central nervous system von Lin, Simon X., Curtis, Maurice A., Sperry, Jonathan

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Reflected entropy in random tensor networks. Part II. A topological index from canonical purification von Akers, Chris, Faulkner, Thomas, Lin, Simon, Rath, Pratik

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Genome-wide DNA methylation indicates silencing of tumor suppressor genes in uterine leiomyoma von Navarro, Antonia, Yin, Ping, Monsivais, Diana, Lin, Simon M, Du, Pan, Wei, Jian-Jun, Bulun, Serdar E

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Windows into the past: lake sediment phosphorus trajectories act as integrated archives of watershed disturbance legacies over centennial scales von Bhattacharya, Ruchi, Lin, Simon G M, Basu, Nandita B

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Model-based variance-stabilizing transformation for Illumina microarray data von Lin, Simon M., Du, Pan, Huber, Wolfgang, Kibbe, Warren A.

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Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching von Du, Pan, Kibbe, Warren A., Lin, Simon M.

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The reflected entanglement spectrum for free fermions von Dutta, Souvik, Faulkner, Thomas, Lin, Simon

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Annotating the human genome with Disease Ontology von Osborne, John D, Flatow, Jared, Holko, Michelle, Lin, Simon M, Kibbe, Warren A, Zhu, Lihua Julie, Danila, Maria I, Feng, Gang, Chisholm, Rex L

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Opportunities for drug repositioning from phenome-wide association studies von Rastegar-Mojarad, Majid, Ye, Zhan, Kolesar, Jill M, Hebbring, Scott J, Lin, Simon M

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RavenR v2.1.4: an open-source R package to support flexible hydrologic modelling von Chlumsky, Robert, Craig, James R, Lin, Simon G. M, Grass, Sarah, Scantlebury, Leland, Brown, Genevieve, Arabzadeh, Rezgar

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Forest fire effects on stream water quality at continental scales: a meta-analysis von Hampton, Tyler B, Lin, Simon, Basu, Nandita B

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Inhibition of Sphingosine-1-Phosphate Receptor 2 by JTE013 Promoted Osteogenesis by Increasing Vesicle Trafficking, Wnt/Ca2+, and BMP/Smad Signaling von Lin, Simon, Pandruvada, Subramanya, Yu, Hong

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BasinMaker 3.0: A GIS toolbox for distributed watershed delineation of complex lake-river routing networks von Han, Ming, Shen, Hongren, Tolson, Bryan A., Craig, James R., Mai, Juliane, Lin, Simon G.M., Basu, Nandita B., Awol, Frezer S.

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