MODOMICS: a database of RNA modification pathways. 2017 update von Boccaletto, Pietro, Machnicka, Magdalena A, Purta, Elzbieta, Piątkowski, Paweł, Bagiński, Błażej, Wirecki, Tomasz K, de Crécy-Lagard, Valérie, Ross, Robert, Limbach, Patrick A, Kotter, Annika, Helm, Mark, Bujnicki, Janusz M

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Oligonucleotide analysis by hydrophilic interaction liquid chromatography-mass spectrometry in the absence of ion-pair reagents von Lobue, Peter A., Jora, Manasses, Addepalli, Balasubrahmanyam, Limbach, Patrick A.

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Mass spectrometry of modified RNAs: recent developments von Wetzel, Collin, Limbach, Patrick A

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Transcriptome-wide distribution and function of RNA hydroxymethylcytosine von Delatte, Benjamin, Wang, Fei, Ngoc, Long Vo, Collignon, Evelyne, Bonvin, Elise, Deplus, Rachel, Calonne, Emilie, Hassabi, Bouchra, Putmans, Pascale, Awe, Stephan, Wetzel, Collin, Kreher, Judith, Soin, Romuald, Creppe, Catherine, Limbach, Patrick A., Gueydan, Cyril, Kruys, Véronique, Brehm, Alexander, Minakhina, Svetlana, Defrance, Matthieu, Steward, Ruth, Fuks, François

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In Vivo X-Ray Footprinting of Pre-30S Ribosomes Reveals Chaperone-Dependent Remodeling of Late Assembly Intermediates von Clatterbuck Soper, Sarah F, Dator, Romel P, Limbach, Patrick A, Woodson, Sarah A

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Sequence mapping of transfer RNA chemical modifications by liquid chromatography tandem mass spectrometry von Ross, Robert, Cao, Xiaoyu, Yu, Ningxi, Limbach, Patrick A.

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RNAModMapper: RNA Modification Mapping Software for Analysis of Liquid Chromatography Tandem Mass Spectrometry Data von Yu, Ningxi, Lobue, Peter A, Cao, Xiaoyu, Limbach, Patrick A

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Dynamic 23S rRNA modification ho5C2501 benefits Escherichia coli under oxidative stress von Fasnacht, Michel, Gallo, Stefano, Sharma, Puneet, Himmelstoß, Maximilian, Limbach, Patrick A, Willi, Jessica, Polacek, Norbert

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Distinct substrate specificities of the human tRNA methyltransferases TRMT10A and TRMT10B von Howell, Nathan W, Jora, Manasses, Jepson, Benjamin F, Limbach, Patrick A, Jackman, Jane E

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Going global: the new era of mapping modifications in RNA von Limbach, Patrick A., Paulines, Mellie June

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Novel ribonuclease activity of cusativin from Cucumis sativus for mapping nucleoside modifications in RNA von Addepalli, Balasubrahmanyam, Venus, Sarah, Thakur, Priti, Limbach, Patrick A.

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Preferential import of queuosine-modified tRNAs into Trypanosoma brucei mitochondrion is critical for organellar protein synthesis von Kulkarni, Sneha, Rubio, Mary Anne T, Hegedűsová, Eva, Ross, Robert L, Limbach, Patrick A, Alfonzo, Juan D, Paris, Zdeněk

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tRNA Modification Profiles and Codon-Decoding Strategies in Methanocaldococcus jannaschii von Yu, Ningxi, Jora, Manasses, Solivio, Beulah, Thakur, Priti, Acevedo-Rocha, Carlos G, Randau, Lennart, de Crécy-Lagard, Valérie, Addepalli, Balasubrahmanyam, Limbach, Patrick A

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RNA Cleavage Properties of Nucleobase-Specific RNase MC1 and Cusativin Are Determined by the Dinucleotide-Binding Interactions in the Enzyme-Active Site von Thakur, Priti, Atway, Jowad, Limbach, Patrick A, Addepalli, Balasubrahmanyam

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Ionizing radiation and chemical oxidant exposure impacts on Cryptococcus neoformans transfer RNAs von Kelley, Melissa, Paulines, Mellie June, Yoshida, George, Myers, Ryan, Jora, Manasses, Levoy, Joel P, Addepalli, Balasubrahmanyam, Benoit, Joshua B, Limbach, Patrick A

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Pytheas: a software package for the automated analysis of RNA sequences and modifications via tandem mass spectrometry von D’Ascenzo, Luigi, Popova, Anna M., Abernathy, Scott, Sheng, Kai, Limbach, Patrick A., Williamson, James R.

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Dynamic queuosine changes in tRNA couple nutrient levels to codon choice in Trypanosoma brucei von Dixit, Sameer, Kessler, Alan C, Henderson, Jeremy, Pan, Xiaobei, Zhao, Ruoxia, D’Almeida, Gabriel Silveira, Kulkarni, Sneha, Rubio, Mary Anne T, Hegedűsová, Eva, Ross, Robert L, Limbach, Patrick A, Green, Brian D, Paris, Zdeněk, Alfonzo, Juan D

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Essentiality of threonylcarbamoyladenosine (t6A), a universal tRNA modification, in bacteria von Thiaville, Patrick C., El Yacoubi, Basma, Köhrer, Caroline, Thiaville, Jennifer J., Deutsch, Chris, Iwata‐Reuyl, Dirk, Bacusmo, Jo Marie, Armengaud, Jean, Bessho, Yoshitaka, Wetzel, Collin, Cao, Xiaoyu, Limbach, Patrick A., RajBhandary, Uttam L., Crécy‐Lagard, Valérie

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Nano LC-MS using capillary columns enables accurate quantification of modified ribonucleosides at low femtomol levels von Sarin, L Peter, Kienast, Sandra D, Leufken, Johannes, Ross, Robert L, Dziergowska, Agnieszka, Debiec, Katarzyna, Sochacka, Elzbieta, Limbach, Patrick A, Fufezan, Christian, Drexler, Hannes C A, Leidel, Sebastian A

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Evaluating the reproducibility of quantifying modified nucleosides from ribonucleic acids by LC–UV–MS von Russell, Susan P., Limbach, Patrick A.

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