H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions von Cai, Yichao, Zhang, Ying, Loh, Yan Ping, Tng, Jia Qi, Lim, Mei Chee, Cao, Zhendong, Raju, Anandhkumar, Lieberman Aiden, Erez, Li, Shang, Manikandan, Lakshmanan, Tergaonkar, Vinay, Tucker-Kellogg, Greg, Fullwood, Melissa Jane

Volltext

De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture von Di Pierro, Michele, Cheng, Ryan R., Aiden, Erez Lieberman, Wolynes, Peter G., Onuchic, José N.

Volltext

Using deep learning and Google Street View to estimate the demographic makeup of neighborhoods across the United States von Gebru, Timnit, Krause, Jonathan, Wang, Yilun, Chen, Duyun, Deng, Jia, Aiden, Erez Lieberman, Fei-Fei, Li

Volltext

CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions von Kaushal, Anjali, Mohana, Giriram, Dorier, Julien, Özdemir, Isa, Omer, Arina, Cousin, Pascal, Semenova, Anastasiia, Taschner, Michael, Dergai, Oleksandr, Marzetta, Flavia, Iseli, Christian, Eliaz, Yossi, Weisz, David, Shamim, Muhammad Saad, Guex, Nicolas, Lieberman Aiden, Erez, Gambetta, Maria Cristina

Volltext

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds von Dudchenko, Olga, Batra, Sanjit S., Omer, Arina D., Nyquist, Sarah K., Hoeger, Marie, Durand, Neva C., Shamim, Muhammad S., Machol, Ido, Lander, Eric S., Aiden, Aviva Presser, Aiden, Erez Lieberman

Volltext

Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator von Sanborn, Adrian L, Yeh, Benjamin T, Feigerle, Jordan T, Hao, Cynthia V, Townshend, Raphael Jl, Lieberman Aiden, Erez, Dror, Ron O, Kornberg, Roger D

Volltext

The fundamental role of chromatin loop extrusion in physiological V(D)J recombination von Zhang, Yu, Zhang, Xuefei, Ba, Zhaoqing, Liang, Zhuoyi, Dring, Edward W., Hu, Hongli, Lou, Jiangman, Kyritsis, Nia, Zurita, Jeffrey, Shamim, Muhammad S., Presser Aiden, Aviva, Lieberman Aiden, Erez, Alt, Frederick W.

Volltext

The expanding scope of DNA sequencing von Shendure, Jay, Aiden, Erez Lieberman

Volltext

Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map von Eagen, Kyle P., Aiden, Erez Lieberman, Kornberg, Roger D.

Volltext

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping von Rao, Suhas S.P., Huntley, Miriam H., Durand, Neva C., Stamenova, Elena K., Bochkov, Ivan D., Robinson, James T., Sanborn, Adrian L., Machol, Ido, Omer, Arina D., Lander, Eric S., Aiden, Erez Lieberman

Volltext

Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development von Phanstiel, Douglas H., Van Bortle, Kevin, Spacek, Damek, Hess, Gaelen T., Shamim, Muhammad Saad, Machol, Ido, Love, Michael I., Aiden, Erez Lieberman, Bassik, Michael C., Snyder, Michael P.

Volltext

Activity-by-contact model of enhancer–promoter regulation from thousands of CRISPR perturbations von Fulco, Charles P., Nasser, Joseph, Jones, Thouis R., Munson, Glen, Bergman, Drew T., Subramanian, Vidya, Grossman, Sharon R., Anyoha, Rockwell, Doughty, Benjamin R., Patwardhan, Tejal A., Nguyen, Tung H., Kane, Michael, Perez, Elizabeth M., Durand, Neva C., Lareau, Caleb A., Stamenova, Elena K., Aiden, Erez Lieberman, Lander, Eric S., Engreitz, Jesse M.

Volltext

Genome Organization Drives Chromosome Fragility von Canela, Andres, Maman, Yaakov, Jung, Seolkyoung, Wong, Nancy, Callen, Elsa, Day, Amanda, Kieffer-Kwon, Kyong-Rim, Pekowska, Aleksandra, Zhang, Hongliang, Rao, Suhas S.P., Huang, Su-Chen, Mckinnon, Peter J., Aplan, Peter D., Pommier, Yves, Aiden, Erez Lieberman, Casellas, Rafael, Nussenzweig, André

Volltext

Transferable model for chromosome architecture von Di Pierro, Michele, Zhang, Bin, Aiden, Erez Lieberman, Wolynes, Peter G., Onuchic, José N.

Volltext

Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals von Rowley, M Jordan, Poulet, Axel, Nichols, Michael H, Bixler, Brianna J, Sanborn, Adrian L, Brouhard, Elizabeth A, Hermetz, Karen, Linsenbaum, Hannah, Csankovszki, Gyorgyi, Lieberman Aiden, Erez, Corces, Victor G

Volltext

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes von Sanborn, Adrian L., Rao, Suhas S. P., Huang, Su-Chen, Durand, Neva C., Huntley, Miriam H., Jewett, Andrew I., Bochkov, Ivan D., Chinnappan, Dharmaraj, Cutkosky, Ashok, Li, Jian, Geeting, Kristopher P., Gnirke, Andreas, Melnikov, Alexandre, McKenna, Doug, Stamenova, Elena K., Lander, Eric S., Aiden, Erez Lieberman

Volltext

A simple rule for the evolution of cooperation on graphs and social networks von Nowak, Martin A, Ohtsuki, Hisashi, Hauert, Christoph, Lieberman, Erez

Volltext

Cohesin depleted cells rebuild functional nuclear compartments after endomitosis von Cremer, Marion, Brandstetter, Katharina, Maiser, Andreas, Rao, Suhas S. P., Schmid, Volker J., Guirao-Ortiz, Miguel, Mitra, Namita, Mamberti, Stefania, Klein, Kyle N., Gilbert, David M., Leonhardt, Heinrich, Cardoso, M. Cristina, Aiden, Erez Lieberman, Harz, Hartmann, Cremer, Thomas

Volltext

A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers von El Khattabi, Laila, Zhao, Haiyan, Kalchschmidt, Jens, Young, Natalie, Jung, Seolkyoung, Van Blerkom, Peter, Kieffer-Kwon, Philippe, Kieffer-Kwon, Kyong-Rim, Park, Solji, Wang, Xiang, Krebs, Jordan, Tripathi, Subhash, Sakabe, Noboru, Sobreira, Débora R., Huang, Su-Chen, Rao, Suhas S.P., Pruett, Nathanael, Chauss, Daniel, Sadler, Erica, Lopez, Andrea, Nóbrega, Marcelo A., Aiden, Erez Lieberman, Asturias, Francisco J., Casellas, Rafael

Volltext

MCPH1 inhibits Condensin II during interphase by regulating its SMC2-Kleisin interface von Houlard, Martin, Cutts, Erin E, Shamim, Muhammad S, Godwin, Jonathan, Weisz, David, Presser Aiden, Aviva, Lieberman Aiden, Erez, Schermelleh, Lothar, Vannini, Alessandro, Nasmyth, Kim

Volltext