A Description of the Molecular Signatures Database (MSigDB) Web Site von Liberzon, Arthur

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Molecular signatures database (MSigDB) 3.0 von LIBERZON, Arthur, SUBRAMANIAN, Aravind, PINCHBACK, Reid, THORVALDSDOTTIR, Helga, TAMAYO, Pablo, MESIROV, Jill P

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A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles von Subramanian, Aravind, Narayan, Rajiv, Corsello, Steven M., Peck, David D., Natoli, Ted E., Lu, Xiaodong, Gould, Joshua, Davis, John F., Tubelli, Andrew A., Asiedu, Jacob K., Lahr, David L., Hirschman, Jodi E., Liu, Zihan, Donahue, Melanie, Julian, Bina, Khan, Mariya, Wadden, David, Smith, Ian C., Lam, Daniel, Liberzon, Arthur, Toder, Courtney, Bagul, Mukta, Orzechowski, Marek, Enache, Oana M., Piccioni, Federica, Johnson, Sarah A., Lyons, Nicholas J., Berger, Alice H., Shamji, Alykhan F., Brooks, Angela N., Vrcic, Anita, Flynn, Corey, Rosains, Jacqueline, Takeda, David Y., Hu, Roger, Davison, Desiree, Lamb, Justin, Ardlie, Kristin, Hogstrom, Larson, Greenside, Peyton, Gray, Nathanael S., Clemons, Paul A., Silver, Serena, Wu, Xiaoyun, Zhao, Wen-Ning, Read-Button, Willis, Wu, Xiaohua, Haggarty, Stephen J., Ronco, Lucienne V., Boehm, Jesse S., Schreiber, Stuart L., Doench, John G., Bittker, Joshua A., Root, David E., Wong, Bang, Golub, Todd R.

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Combining Clinical, Pathology, and Gene Expression Data to Predict Recurrence of Hepatocellular Carcinoma von Villanueva, Augusto, Hoshida, Yujin, Battiston, Carlo, Tovar, Victoria, Sia, Daniela, Alsinet, Clara, Cornella, Helena, Liberzon, Arthur, Kobayashi, Masahiro, Kumada, Hiromitsu, Thung, Swan N, Bruix, Jordi, Newell, Philippa, April, Craig, Fan, Jian–Bing, Roayaie, Sasan, Mazzaferro, Vincenzo, Schwartz, Myron E, Llovet, Josep M

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Characterizing genomic alterations in cancer by complementary functional associations von Kim, Jong Wook, Botvinnik, Olga B, Abudayyeh, Omar, Birger, Chet, Rosenbluh, Joseph, Shrestha, Yashaswi, Abazeed, Mohamed E, Hammerman, Peter S, DiCara, Daniel, Konieczkowski, David J, Johannessen, Cory M, Liberzon, Arthur, Alizad-Rahvar, Amir Reza, Alexe, Gabriela, Aguirre, Andrew, Ghandi, Mahmoud, Greulich, Heidi, Vazquez, Francisca, Weir, Barbara A, Van Allen, Eliezer M, Tsherniak, Aviad, Shao, Diane D, Zack, Travis I, Noble, Michael, Getz, Gad, Beroukhim, Rameen, Garraway, Levi A, Ardakani, Masoud, Romualdi, Chiara, Sales, Gabriele, Barbie, David A, Boehm, Jesse S, Hahn, William C, Mesirov, Jill P, Tamayo, Pablo

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Network-based analysis of affected biological processes in type 2 diabetes models von Liu, Manway, Liberzon, Arthur, Kong, Sek Won, Lai, Weil R, Park, Peter J, Kohane, Isaac S, Kasif, Simon

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Unbiased transcriptome signature of in vivo cell proliferation reveals pro- and antiproliferative gene networks von Cohen, Meital, Vecsler, Manuela, Liberzon, Arthur, Noach, Meirav, Zlotorynski, Eitan, Tzur, Amit

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Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases von Chen, Qingyu, Britto, Ramona, Erill, Ivan, Jeffery, Constance J., Liberzon, Arthur, Magrane, Michele, Onami, Jun-ichi, Robinson-Rechavi, Marc, Sponarova, Jana, Zobel, Justin, Verspoor, Karin

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Translating in vitro CFTR rescue into small molecule correctors for cystic fibrosis using the Library of Integrated Network‐based Cellular Signatures drug discovery platform von Strub, Matthew D., Ramachandran, Shyam, Boudko, Dmitri Y., Meleshkevitch, Ella A., Pezzulo, Alejandro A., Subramanian, Aravind, Liberzon, Arthur, Bridges, Robert J., McCray, Paul B.

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Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States von Kim, Jong Wook, Abudayyeh, Omar O., Yeerna, Huwate, Yeang, Chen-Hsiang, Stewart, Michelle, Jenkins, Russell W., Kitajima, Shunsuke, Konieczkowski, David J., Medetgul-Ernar, Kate, Cavazos, Taylor, Mah, Clarence, Ting, Stephanie, Van Allen, Eliezer M., Cohen, Ofir, Mcdermott, John, Damato, Emily, Aguirre, Andrew J., Liang, Jonathan, Liberzon, Arthur, Alexe, Gabriella, Doench, John, Ghandi, Mahmoud, Vazquez, Francisca, Weir, Barbara A., Tsherniak, Aviad, Subramanian, Aravind, Meneses-Cime, Karina, Park, Jason, Clemons, Paul, Garraway, Levi A., Thomas, David, Boehm, Jesse S., Barbie, David A., Hahn, William C., Mesirov, Jill P., Tamayo, Pablo

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The Molecular Signatures Database Hallmark Gene Set Collection von Liberzon, Arthur, Birger, Chet, Thorvaldsdóttir, Helga, Ghandi, Mahmoud, Mesirov, Jill P., Tamayo, Pablo

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Compendium of Immune Signatures Identifies Conserved and Species-Specific Biology in Response to Inflammation von Godec, Jernej, Tan, Yan, Liberzon, Arthur, Tamayo, Pablo, Bhattacharya, Sanchita, Butte, Atul J., Mesirov, Jill P., Haining, W. Nicholas

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The limitations of simple gene set enrichment analysis assuming gene independence von Tamayo, Pablo, Steinhardt, George, Liberzon, Arthur, Mesirov, Jill P

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GeNets: a unified web platform for network-based genomic analyses von Li, Taibo, Kim, April, Rosenbluh, Joseph, Horn, Heiko, Greenfeld, Liraz, An, David, Zimmer, Andrew, Liberzon, Arthur, Bistline, Jon, Natoli, Ted, Li, Yang, Tsherniak, Aviad, Narayan, Rajiv, Subramanian, Aravind, Liefeld, Ted, Wong, Bang, Thompson, Dawn, Calvo, Sarah, Carr, Steve, Boehm, Jesse, Jaffe, Jake, Mesirov, Jill, Hacohen, Nir, Regev, Aviv, Lage, Kasper

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Abstract 2202: The combination of a mouse ortholog of ALKS 4230, a selective agonist of the intermediate affinity IL-2 receptor, and the angiogenesis inhibitor lucitanib enhances a... von Lopes, Jared E., Dusek, Rachel L., Robillard, Liliane, Nguyen, Minh, Roth, Bruce, Vought, Bryan, Liberzon, Arthur, Winquist, Raymond J., Losey, Heather C.

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Abstract 1848: A novel murine tumor model for assessing the efficacy of neoadjuvant dosing regimens for immunotherapies von Prijic, Sara, Wood, Jason, Liberzon, Arthur, Nistala, Harikiran, Winquist, Raymond J., Lopes, Jared E.

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GeNets: A unified web platform for network-based analyses of genomic data von Li, Taibo, Kim, April, Rosenbluh, Joseph, Horn, Heiko, Greenfeld, Liraz, An, David, Zimmer, Andrew, Liberzon, Arthur, Bistline, Jon, Natoli, Ted, Li, Yang, Tsherniak, Aviad, Narayan, Rajiv, Subramanian, Aravind, Liefeld, Ted, Wong, Bang, Thompson, Dawn, Calvo, Sarah, Carr, Steve, Boehm, Jesse, Jaffe, Jake, Mesirov, Jill, Hacohen, Nir, Regev, Aviv, Lage, Kasper

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Using GenePattern for Gene Expression Analysis von Kuehn, Heidi, Liberzon, Arthur, Reich, Michael, Mesirov, Jill P.

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AraPath: a knowledgebase for pathway analysis in Arabidopsis von LIMING LAI, LIBERZON, Arthur, HENNESSEY, Jason, GAIXIN JIANG, JIANLI QI, MESIROV, Jill P, GE, Steven X

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Role of intrinsic DNA binding specificity in defining target genes of the mammalian transcription factor PDX1 von Liberzon, Arthur, Ridner, Gabriela, Walker, Michael D.

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