TEINet: a deep learning framework for prediction of TCR–epitope binding specificity von Jiang, Yuepeng, Huo, Miaozhe, Cheng Li, Shuai

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Heterogeneity of immune microenvironment in ovarian cancer and its clinical significance: a retrospective study von Gao, Yue, Chen, Lingxi, Cai, Guangyao, Xiong, Xiaoming, Wu, Yuan, Ma, Ding, Li, Shuai Cheng, Gao, Qinglei

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Incorporating cell hierarchy to decipher the functional diversity of single cells von Chen, Lingxi, Li, Shuai Cheng

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Elevated incidence of somatic mutations at prevalent genetic sites von Wang, Mengyao, Li, Shuai Cheng, Shen, Bairong

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Enhancing insights into diseases through horizontal gene transfer event detection from gut microbiome von Wang, Shuai, Jiang, Yiqi, Che, Lijia, Wang, Ruo Han, Li, Shuai Cheng

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Deep autoregressive generative models capture the intrinsics embedded in T-cell receptor repertoires von Jiang, Yuepeng, Li, Shuai Cheng

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PlasmidScope: a comprehensive plasmid database with rich annotations and online analytical tools von Li, Yinhu, Feng, Xikang, Chen, Xuhua, Yang, Shuo, Zhao, Zicheng, Chen, Yu, Li, Shuai Cheng

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Both simulation and sequencing data reveal coinfections with multiple SARS-CoV-2 variants in the COVID-19 pandemic von Li, Yinhu, Jiang, Yiqi, Li, Zhengtu, Yu, Yonghan, Chen, Jiaxing, Jia, Wenlong, Kaow Ng, Yen, Ye, Feng, Cheng Li, Shuai, Shen, Bairong

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DeepMF: deciphering the latent patterns in omics profiles with a deep learning method von Chen, Lingxi, Xu, Jiao, Li, Shuai Cheng

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GutMetaNet: an integrated database for exploring horizontal gene transfer and functional redundancy in the human gut microbiome von Jiang, Yiqi, Wang, Yanfei, Che, Lijia, Yang, Shuo, Zhang, Xianglilan, Lin, Yu, Shi, Yucheng, Zou, Nanhe, Wang, Shuai, Zhang, Yuanzheng, Zhao, Zicheng, Li, Shuai Cheng

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SMURF: embedding single-cell RNA-seq data with matrix factorization preserving self-consistency von Pu, Juhua, Wang, Bingchen, Liu, Xingwu, Chen, Lingxi, Li, Shuai Cheng

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SuperTAD: robust detection of hierarchical topologically associated domains with optimized structural information von Zhang, Yu Wei, Wang, Meng Bo, Li, Shuai Cheng

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Deep learning for HGT insertion sites recognition von Li, Chen, Chen, Jiaxing, Li, Shuai Cheng

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Deciphering complex breakage-fusion-bridge genome rearrangements with Ambigram von Li, Chaohui, Chen, Lingxi, Pan, Guangze, Zhang, Wenqian, Li, Shuai Cheng

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Biomarkers and computational models for predicting efficacy to tumor ICI immunotherapy von Qin, Yurong, Huo, Miaozhe, Liu, Xingwu, Li, Shuai Cheng

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Evaporation of droplets on superhydrophobic surfaces: surface roughness and small droplet size effects von Chen, Xuemei, Ma, Ruiyuan, Li, Jintao, Hao, Chonglei, Guo, Wei, Luk, B L, Li, Shuai Cheng, Yao, Shuhuai, Wang, Zuankai

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Quantitative annotations of T-Cell repertoire specificity von Luo, Jiaqi, Wang, Xueying, Zou, Yiping, Chen, Lingxi, Liu, Wei, Zhang, Wei, Li, Shuai Cheng

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DNA Methylation Markers for Pan-Cancer Prediction by Deep Learning von Liu, Biao, Liu, Yulu, Pan, Xingxin, Li, Mengyao, Yang, Shuang, Li, Shuai Cheng

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Somatic variant analysis suite: copy number variation clonal visualization online platform for large-scale single-cell genomics von Chen, Lingxi, Qing, Yuhao, Li, Ruikang, Li, Chaohui, Li, Hechen, Feng, Xikang, Li, Shuai Cheng

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Comprehensive human respiratory genome catalogue underlies the high resolution and precision of the respiratory microbiome von Li, Yinhu, Pan, Guangze, Wang, Shuai, Li, Zhengtu, Yang, Ru, Jiang, Yiqi, Chen, Yu, Li, Shuai Cheng, Shen, Bairong

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