The Utility of Biomarkers in the Diagnosis and Therapy of Inflammatory Bowel Disease von Lewis, James D

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Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease von Lewis, James D., Chen, Eric Z., Baldassano, Robert N., Otley, Anthony R., Griffiths, Anne M., Lee, Dale, Bittinger, Kyle, Bailey, Aubrey, Friedman, Elliot S., Hoffmann, Christian, Albenberg, Lindsey, Sinha, Rohini, Compher, Charlene, Gilroy, Erin, Nessel, Lisa, Grant, Amy, Chehoud, Christel, Li, Hongzhe, Wu, Gary D., Bushman, Frederic D.

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Diet in the Pathogenesis and Treatment of Inflammatory Bowel Diseases von Lee, Dale, Albenberg, Lindsey, Compher, Charlene, Baldassano, Robert, Piccoli, David, Lewis, James D, Wu, Gary D

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Rapid evolution of the human gut virome von Minot, Samuel, Bryson, Alexandra, Chehoud, Christel, Wu, Gary D., Lewis, James D., Bushman, Frederic D.

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Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents von Hoffmann, Christian, Dollive, Serena, Grunberg, Stephanie, Chen, Jun, Li, Hongzhe, Wu, Gary D, Lewis, James D, Bushman, Frederic D

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Effect of IBD medications on COVID-19 outcomes: results from an international registry von Ungaro, Ryan C, Brenner, Erica J, Gearry, Richard B, Kaplan, Gilaad G, Kissous-Hunt, Michele, Lewis, James D, Ng, Siew C, Rahier, Jean-Francois, Reinisch, Walter, Steinwurz, Flávio, Underwood, Fox E, Zhang, Xian, Colombel, Jean-Frederic, Kappelman, Michael D

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Fungi of the murine gut: episodic variation and proliferation during antibiotic treatment von Dollive, Serena, Chen, Ying-Yu, Grunberg, Stephanie, Bittinger, Kyle, Hoffmann, Christian, Vandivier, Lee, Cuff, Christopher, Lewis, James D, Wu, Gary D, Bushman, Frederic D

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Randomized Controlled-Feeding Study of Dietary Emulsifier Carboxymethylcellulose Reveals Detrimental Impacts on the Gut Microbiota and Metabolome von Chassaing, Benoit, Compher, Charlene, Bonhomme, Brittaney, Liu, Qing, Tian, Yuan, Walters, William, Nessel, Lisa, Delaroque, Clara, Hao, Fuhua, Gershuni, Victoria, Chau, Lillian, Ni, Josephine, Bewtra, Meenakshi, Albenberg, Lindsey, Bretin, Alexis, McKeever, Liam, Ley, Ruth E., Patterson, Andrew D., Wu, Gary D., Gewirtz, Andrew T., Lewis, James D.

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Role of dietary fiber in the recovery of the human gut microbiome and its metabolome von Tanes, Ceylan, Bittinger, Kyle, Gao, Yuan, Friedman, Elliot S., Nessel, Lisa, Roy Paladhi, Unmesha, Chau, Lillian, Panfen, Erika, Fischbach, Michael A., Braun, Jonathan, Xavier, Ramnik J., Clish, Clary B., Li, Hongzhe, Bushman, Frederic D., Lewis, James D., Wu, Gary D.

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Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA von Kelly, Brendan J, Gross, Robert, Bittinger, Kyle, Sherrill-Mix, Scott, Lewis, James D, Collman, Ronald G, Bushman, Frederic D, Li, Hongzhe

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Correlation Between Intraluminal Oxygen Gradient and Radial Partitioning of Intestinal Microbiota von Albenberg, Lindsey, Esipova, Tatiana V, Judge, Colleen P, Bittinger, Kyle, Chen, Jun, Laughlin, Alice, Grunberg, Stephanie, Baldassano, Robert N, Lewis, James D, Li, Hongzhe, Thom, Stephen R, Bushman, Frederic D, Vinogradov, Sergei A, Wu, Gary D

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The human gut virome: inter-individual variation and dynamic response to diet von Minot, Samuel, Sinha, Rohini, Chen, Jun, Li, Hongzhe, Keilbaugh, Sue A, Wu, Gary D, Lewis, James D, Bushman, Frederic D

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Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis von Koeth, Robert A, Wang, Zeneng, Levison, Bruce S, Buffa, Jennifer A, Org, Elin, Sheehy, Brendan T, Britt, Earl B, Fu, Xiaoming, Wu, Yuping, Li, Lin, Smith, Jonathan D, DiDonato, Joseph A, Chen, Jun, Li, Hongzhe, Wu, Gary D, Lewis, James D, Warrier, Manya, Brown, J Mark, Krauss, Ronald M, Tang, W H Wilson, Bushman, Frederic D, Lusis, Aldons J, Hazen, Stanley L

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Disentangling the Association between Statins, Cholesterol, and Colorectal Cancer: A Nested Case-Control Study von Mamtani, Ronac, Lewis, James D, Scott, Frank I, Ahmad, Tariq, Goldberg, David S, Datta, Jashodeep, Yang, Yu-Xiao, Boursi, Ben

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Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags von Wu, Gary D, Lewis, James D, Hoffmann, Christian, Chen, Ying-Yu, Knight, Rob, Bittinger, Kyle, Hwang, Jennifer, Chen, Jun, Berkowsky, Ronald, Nessel, Lisa, Li, Hongzhe, Bushman, Frederic D

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Use of the noninvasive components of the mayo score to assess clinical response in Ulcerative Colitis von Lewis, James D., Chuai, Shaokun, Nessel, Lisa, Lichtenstein, Gary R., Aberra, Faten N., Ellenberg, Jonas H.

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Hypervariable loci in the human gut virome von Minot, Samuel, Grunberg, Stephanie, Wu, Gary D, Lewis, James D, Bushman, Frederic D

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Antibiotic Exposure and Juvenile Idiopathic Arthritis: A Case-Control Study von Horton, Daniel B, Scott, Frank I, Haynes, Kevin, Putt, Mary E, Rose, Carlos D, Lewis, James D, Strom, Brian L

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Association Between Bariatric Surgery and Alcohol Use–Related Hospitalization and All-Cause Mortality in a Veterans Affairs Cohort von Mahmud, Nadim, Panchal, Sarjukumar, Abu-Gazala, Samir, Serper, Marina, Lewis, James D, Kaplan, David E

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Improved characterization of medically relevant fungi in the human respiratory tract using next-generation sequencing von Bittinger, Kyle, Charlson, Emily S, Loy, Elizabeth, Shirley, David J, Haas, Andrew R, Laughlin, Alice, Yi, Yanjie, Wu, Gary D, Lewis, James D, Frank, Ian, Cantu, Edward, Diamond, Joshua M, Christie, Jason D, Collman, Ronald G, Bushman, Frederic D

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