Omicron BA.4/BA.5 escape neutralizing immunity elicited by BA.1 infection von Khan, Khadija, Karim, Farina, Ganga, Yashica, Bernstein, Mallory, Jule, Zesuliwe, Reedoy, Kajal, Cele, Sandile, Lustig, Gila, Amoako, Daniel, Wolter, Nicole, Samsunder, Natasha, Sivro, Aida, San, James Emmanuel, Giandhari, Jennifer, Tegally, Houriiyah, Pillay, Sureshnee, Naidoo, Yeshnee, Mazibuko, Matilda, Miya, Yoliswa, Ngcobo, Nokuthula, Manickchund, Nithendra, Magula, Nombulelo, Karim, Quarraisha Abdool, von Gottberg, Anne, Abdool Karim, Salim S., Hanekom, Willem, Gosnell, Bernadett I., Lessells, Richard J., de Oliveira, Tulio, Moosa, Mahomed-Yunus S., Sigal, Alex

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SARS-CoV-2 prolonged infection during advanced HIV disease evolves extensive immune escape von Cele, Sandile, Karim, Farina, Lustig, Gila, San, James Emmanuel, Hermanus, Tandile, Tegally, Houriiyah, Snyman, Jumari, Moyo-Gwete, Thandeka, Wilkinson, Eduan, Bernstein, Mallory, Khan, Khadija, Hwa, Shi-Hsia, Tilles, Sasha W., Singh, Lavanya, Giandhari, Jennifer, Mthabela, Ntombifuthi, Mazibuko, Matilda, Ganga, Yashica, Gosnell, Bernadett I., Karim, Salim S. Abdool, Hanekom, Willem, Van Voorhis, Wesley C., Ndung’u, Thumbi, Lessells, Richard J., Moore, Penny L., Moosa, Mahomed-Yunus S., de Oliveira, Tulio, Sigal, Alex

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The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages von Martin, Darren P., Weaver, Steven, Tegally, Houriiyah, San, James Emmanuel, Shank, Stephen D., Wilkinson, Eduan, Lucaci, Alexander G., Giandhari, Jennifer, Naidoo, Sureshnee, Pillay, Yeshnee, Singh, Lavanya, Lessells, Richard J., Gupta, Ravindra K., Wertheim, Joel O., Nekturenko, Anton, Murrell, Ben, Harkins, Gordon W., Lemey, Philippe, MacLean, Oscar A., Robertson, David L., de Oliveira, Tulio, Kosakovsky Pond, Sergei L.

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Evolution and neutralization escape of the SARS-CoV-2 BA.2.86 subvariant von Khan, Khadija, Lustig, Gila, Römer, Cornelius, Reedoy, Kajal, Jule, Zesuliwe, Karim, Farina, Ganga, Yashica, Bernstein, Mallory, Baig, Zainab, Jackson, Laurelle, Mahlangu, Boitshoko, Mnguni, Anele, Nzimande, Ayanda, Stock, Nadine, Kekana, Dikeledi, Ntozini, Buhle, van Deventer, Cindy, Marshall, Terry, Manickchund, Nithendra, Gosnell, Bernadett I., Lessells, Richard J., Karim, Quarraisha Abdool, Abdool Karim, Salim S., Moosa, Mahomed-Yunus S., de Oliveira, Tulio, von Gottberg, Anne, Wolter, Nicole, Neher, Richard A., Sigal, Alex

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Clinical outcomes and cost-effectiveness of COVID-19 vaccination in South Africa von Reddy, Krishna P., Fitzmaurice, Kieran P., Scott, Justine A., Harling, Guy, Lessells, Richard J., Panella, Christopher, Shebl, Fatma M., Freedberg, Kenneth A., Siedner, Mark J.

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Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq von Tshiabuila, Derek, Giandhari, Jennifer, Pillay, Sureshnee, Ramphal, Upasana, Ramphal, Yajna, Maharaj, Arisha, Anyaneji, Ugochukwu Jacob, Naidoo, Yeshnee, Tegally, Houriiyah, San, Emmanuel James, Wilkinson, Eduan, Lessells, Richard J, de Oliveira, Tulio

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Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing von Pillay, Sureshnee, San, James Emmanuel, Tshiabuila, Derek, Naidoo, Yeshnee, Pillay, Yusasha, Maharaj, Akhil, Anyaneji, Ugochukwu J, Wilkinson, Eduan, Tegally, Houriiyah, Lessells, Richard J, Baxter, Cheryl, de Oliveira, Tulio, Giandhari, Jennifer

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Clearance of persistent SARS-CoV-2 associates with increased neutralizing antibodies in advanced HIV disease post-ART initiation von Karim, Farina, Riou, Catherine, Bernstein, Mallory, Jule, Zesuliwe, Lustig, Gila, van Graan, Strauss, Keeton, Roanne S., Upton, Janine-Lee, Ganga, Yashica, Khan, Khadija, Reedoy, Kajal, Mazibuko, Matilda, Govender, Katya, Thambu, Kershnee, Ngcobo, Nokuthula, Venter, Elizabeth, Makhado, Zanele, Hanekom, Willem, von Gottberg, Anne, Hoque, Monjurul, Karim, Quarraisha Abdool, Abdool Karim, Salim S., Manickchund, Nithendra, Magula, Nombulelo, Gosnell, Bernadett I., Lessells, Richard J., Moore, Penny L., Burgers, Wendy A., de Oliveira, Tulio, Moosa, Mahomed-Yunus S., Sigal, Alex

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Association of age with mortality and virological and immunological response to antiretroviral therapy in rural South African adults von Mutevedzi, Portia C, Lessells, Richard J, Rodger, Alison J, Newell, Marie-Louise

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High-levels of acquired drug resistance in adult patients failing first-line antiretroviral therapy in a rural HIV treatment programme in KwaZulu-Natal, South Africa von Manasa, Justen, Lessells, Richard J, Skingsley, Andrew, Naidu, Kevindra K, Newell, Marie-Louise, McGrath, Nuala, de Oliveira, Tulio

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Author Correction: Omicron BA.4/BA.5 escape neutralizing immunity elicited by BA.1 infection von Khan, Khadija, Karim, Farina, Ganga, Yashica, Bernstein, Mallory, Jule, Zesuliwe, Reedoy, Kajal, Cele, Sandile, Lustig, Gila, Amoako, Daniel, Wolter, Nicole, Samsunder, Natasha, Sivro, Aida, San, James Emmanuel, Giandhari, Jennifer, Tegally, Houriiyah, Pillay, Sureshnee, Naidoo, Yeshnee, Mazibuko, Matilda, Miya, Yoliswa, Ngcobo, Nokuthula, Manickchund, Nithendra, Magula, Nombulelo, Karim, Quarraisha Abdool, von Gottberg, Anne, Abdool Karim, Salim S., Hanekom, Willem, Gosnell, Bernadett I., Lessells, Richard J., de Oliveira, Tulio, Moosa, Mahomed-Yunus S., Sigal, Alex

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Reduction in early mortality on antiretroviral therapy for adults in rural South Africa since change in CD4+ cell count eligibility criteria von Lessells, Richard J, Mutevedzi, Portia C, Iwuji, Collins C, Newell, Marie-Louise

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Rapid dynamic changes of FL.2 variant: A case report of COVID-19 breakthrough infection von Choga, Wonderful T, Kurusa Gasenna, Gobuiwang Khilly, San, James Emmanuel, Ookame, Tidimalo, Gobe, Irene, Chand, Mohammed, Phafane, Badisa, Seru, Kedumetse, Matshosi, Patience, Zuze, Boitumelo, Ndlovu, Nokuthula, Matsuru, Teko, Maruapula, Dorcas, Bareng, Ontlametse T, Macheke, Kutlo, Kuate-Lere, Lesego, Tlale, Labapotswe, Lesetedi, Onalethata, Tau, Modiri, Mbulawa, Mpaphi B, Smith-Lawrence, Pamela, Matshaba, Mogomotsi, Shapiro, Roger, Makhema, Joseph, Martin, Darren P, de Oliveira, Tulio, Lessells, Richard J, Lockman, Shahin, Gaseitsiwe, Simani, Moyo, Sikhulile

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The consequences of SARS-CoV-2 within-host persistence von Sigal, Alex, Neher, Richard A, Lessells, Richard J

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SARS-CoV-2 Genetic Diversity and Lineage Dynamics in Egypt during the First 18 Months of the Pandemic von Roshdy, Wael H, Khalifa, Mohamed K, San, James Emmanuel, Tegally, Houriiyah, Wilkinson, Eduan, Showky, Shymaa, Martin, Darren Patrick, Moir, Monika, Naguib, Amel, Elguindy, Nancy, Gomaa, Mokhtar R, Fahim, Manal, Abu Elsood, Hanaa, Mohsen, Amira, Galal, Ramy, Hassany, Mohamed, Lessells, Richard J, Al-Karmalawy, Ahmed A, El-Shesheny, Rabeh, Kandeil, Ahmed M, Ali, Mohamed A, de Oliveira, Tulio

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HIV-1 drug resistance in adults and adolescents on protease inhibitor-based antiretroviral therapy in KwaZulu-Natal Province, South Africa von Chimukangara, Benjamin, Lessells, Richard J., Sartorius, Benn, Gounder, Lilishia, Manyana, Sontaga, Pillay, Melendhran, Singh, Lavanya, Giandhari, Jennifer, Govender, Kerusha, Samuel, Reshmi, Msomi, Nokukhanya, Naidoo, Kogieleum, de Oliveira, Tulio, Moodley, Pravi, Parboosing, Raveen

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COVID-19 Vaccine Uptake and Effectiveness by Time since Vaccination in the Western Cape Province, South Africa: An Observational Cohort Study during 2020-2022 von Kassanjee, Reshma, Davies, Mary-Ann, Heekes, Alexa, Mahomed, Hassan, Hawkridge, Anthony J, Morden, Erna, Jacobs, Theuns, Cohen, Cheryl, Moultrie, Harry, Lessells, Richard J, Van Der Walt, Nicolette, Arendse, Juanita O, Wolter, Nicole, Walaza, Sibongile, Jassat, Waasila, von Gottberg, Anne, Hannan, Patrick L, Feikin, Daniel R, Cloete, Keith, Boulle, Andrew

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Acquired HIV drug resistance and virologic monitoring in a HIV hyper-endemic setting in KwaZulu-Natal Province, South Africa von Chimukangara, Benjamin, Lessells, Richard J, Singh, Lavanya, Grigalionyte, Indra, Yende-Zuma, Nonhlanhla, Adams, Rochelle, Dawood, Halima, Dlamini, Linda, Buthelezi, Sibonisile, Chetty, Sheldon, Diallo, Karidia, Duffus, Wayne A, Mogashoa, Mary, Hagen, Melissa B, Giandhari, Jennifer, de Oliveira, Tulio, Moodley, Pravi, Padayatchi, Nesri, Naidoo, Kogieleum

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Sixteen novel lineages of SARS-CoV-2 in South Africa von Tegally, Houriiyah, Wilkinson, Eduan, Lessells, Richard J., Giandhari, Jennifer, Pillay, Sureshnee, Msomi, Nokukhanya, Mlisana, Koleka, Bhiman, Jinal N., von Gottberg, Anne, Walaza, Sibongile, Fonseca, Vagner, Allam, Mushal, Ismail, Arshad, Glass, Allison J., Engelbrecht, Susan, Van Zyl, Gert, Preiser, Wolfgang, Williamson, Carolyn, Petruccione, Francesco, Sigal, Alex, Gazy, Inbal, Hardie, Diana, Hsiao, Nei-yuan, Martin, Darren, York, Denis, Goedhals, Dominique, San, Emmanuel James, Giovanetti, Marta, Lourenço, José, Alcantara, Luiz Carlos Junior, de Oliveira, Tulio

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SARS-CoV-2 variants of concern: the knowns and unknowns von Lessells, Richard J.

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