Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present von Bantscheff, Marcus, Lemeer, Simone, Savitski, Mikhail M., Kuster, Bernhard

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Lapatinib Resistance in Breast Cancer Cells Is Accompanied by Phosphorylation-Mediated Reprogramming of Glycolysis von Ruprecht, Benjamin, Zaal, Esther A, Zecha, Jana, Wu, Wei, Berkers, Celia R, Kuster, Bernhard, Lemeer, Simone

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Mass-spectrometry-based draft of the human proteome von Wilhelm, Mathias, Schlegl, Judith, Hahne, Hannes, Gholami, Amin Moghaddas, Lieberenz, Marcus, Savitski, Mikhail M., Ziegler, Emanuel, Butzmann, Lars, Gessulat, Siegfried, Marx, Harald, Mathieson, Toby, Lemeer, Simone, Schnatbaum, Karsten, Reimer, Ulf, Wenschuh, Holger, Mollenhauer, Martin, Slotta-Huspenina, Julia, Boese, Joos-Hendrik, Bantscheff, Marcus, Gerstmair, Anja, Faerber, Franz, Kuster, Bernhard

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Meltome atlas—thermal proteome stability across the tree of life von Jarzab, Anna, Kurzawa, Nils, Hopf, Thomas, Moerch, Matthias, Zecha, Jana, Leijten, Niels, Bian, Yangyang, Musiol, Eva, Maschberger, Melanie, Stoehr, Gabriele, Becher, Isabelle, Daly, Charlotte, Samaras, Patroklos, Mergner, Julia, Spanier, Britta, Angelov, Angel, Werner, Thilo, Bantscheff, Marcus, Wilhelm, Mathias, Klingenspor, Martin, Lemeer, Simone, Liebl, Wolfgang, Hahne, Hannes, Savitski, Mikhail M., Kuster, Bernhard

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Comprehensive and Reproducible Phosphopeptide Enrichment Using Iron Immobilized Metal Ion Affinity Chromatography (Fe-IMAC) Columns von Ruprecht, Benjamin, Koch, Heiner, Medard, Guillaume, Mundt, Max, Kuster, Bernhard, Lemeer, Simone

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Defeating Major Contaminants in Fe3+- Immobilized Metal Ion Affinity Chromatography (IMAC) Phosphopeptide Enrichment von Potel, Clement M., Lin, Miao-Hsia, Heck, Albert J.R., Lemeer, Simone

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Confident Phosphorylation Site Localization Using the Mascot Delta Score von Savitski, Mikhail M., Lemeer, Simone, Boesche, Markus, Lang, Manja, Mathieson, Toby, Bantscheff, Marcus, Kuster, Bernhard

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EGFR Dynamics Change during Activation in Native Membranes as Revealed by NMR von Kaplan, Mohammed, Narasimhan, Siddarth, de Heus, Cecilia, Mance, Deni, van Doorn, Sander, Houben, Klaartje, Popov-Čeleketić, Dušan, Damman, Reinier, Katrukha, Eugene A., Jain, Purvi, Geerts, Willie J.C., Heck, Albert J.R., Folkers, Gert E., Kapitein, Lukas C., Lemeer, Simone, van Bergen en Henegouwen, Paul M.P., Baldus, Marc

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Immunomodulatory drugs disrupt the cereblon–CD147–MCT1 axis to exert antitumor activity and teratogenicity von Eichner, Ruth, Heider, Michael, Fernández-Sáiz, Vanesa, van Bebber, Frauke, Garz, Anne-Kathrin, Lemeer, Simone, Rudelius, Martina, Targosz, Bianca-Sabrina, Jacobs, Laura, Knorn, Anna-Maria, Slawska, Jolanta, Platzbecker, Uwe, Germing, Ulrich, Langer, Christian, Knop, Stefan, Einsele, Herrmann, Peschel, Christian, Haass, Christian, Keller, Ulrich, Schmid, Bettina, Götze, Katharina S, Kuster, Bernhard, Bassermann, Florian

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A large synthetic peptide and phosphopeptide reference library for mass spectrometry–based proteomics von Marx, Harald, Lemeer, Simone, Schliep, Jan Erik, Matheron, Lucrece, Mohammed, Shabaz, Cox, Jürgen, Mann, Matthias, Heck, Albert J R, Kuster, Bernhard

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Optimized Enrichment of Phosphoproteomes by Fe-IMAC Column Chromatography von Ruprecht, Benjamin, Koch, Heiner, Domasinska, Petra, Frejno, Martin, Kuster, Bernhard, Lemeer, Simone

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Differential oxidation of protein-tyrosine phosphatases during zebrafish caudal fin regeneration von Wu, Wei, Hale, Alexander James, Lemeer, Simone, den Hertog, Jeroen

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CTGF/VEGFA-activated Fibroblasts Promote Tumor Migration Through Micro-environmental Modulation von Wu, Wei, Zaal, Esther A., Berkers, Celia R., Lemeer, Simone, Heck, Albert J.R.

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Comparing Immobilized Kinase Inhibitors and Covalent ATP Probes for Proteomic Profiling of Kinase Expression and Drug Selectivity von Lemeer, Simone, Zörgiebel, Corina, Ruprecht, Benjamin, Kohl, Kristian, Kuster, Bernhard

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Adaptive Resistance to EGFR-Targeted Therapy by Calcium Signaling in NSCLC Cells von Mulder, Celine, Prust, Nadine, van Doorn, Sander, Reinecke, Maria, Kuster, Bernhard, van Bergen En Henegouwen, Paul, Lemeer, Simone

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Phosphopeptide Fragmentation and Site Localization by Mass Spectrometry: An Update von Potel, Clement M, Lemeer, Simone, Heck, Albert J. R

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RANK signaling increases after anti-HER2 therapy contributing to the emergence of resistance in HER2-positive breast cancer von Sanz-Moreno, Adrián, Palomeras, Sonia, Pedersen, Kim, Morancho, Beatriz, Pascual, Tomas, Galván, Patricia, Benítez, Sandra, Gomez-Miragaya, Jorge, Ciscar, Marina, Jimenez, Maria, Pernas, Sonia, Petit, Anna, Soler-Monsó, María Teresa, Viñas, Gemma, Alsaleem, Mansour, Rakha, Emad A, Green, Andrew R, Santamaria, Patricia G, Mulder, Celine, Lemeer, Simone, Arribas, Joaquin, Prat, Aleix, Puig, Teresa, Gonzalez-Suarez, Eva

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SCFFbxo9 and CK2 direct the cellular response to growth factor withdrawal via Tel2/Tti1 degradation and promote survival in multiple myeloma von Fernández-Sáiz, Vanesa, Targosz, Bianca-Sabrina, Lemeer, Simone, Eichner, Ruth, Langer, Christian, Bullinger, Lars, Reiter, Clemens, Slotta-Huspenina, Julia, Schroeder, Sonja, Knorn, Anna-Maria, Kurutz, Julia, Peschel, Christian, Pagano, Michele, Kuster, Bernhard, Bassermann, Florian

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In-depth Qualitative and Quantitative Profiling of Tyrosine Phosphorylation Using a Combination of Phosphopeptide Immunoaffinity Purification and Stable Isotope Dimethyl Labeling von Boersema, Paul J., Foong, Leong Yan, Ding, Vanessa M.Y., Lemeer, Simone, van Breukelen, Bas, Philp, Robin, Boekhorst, Jos, Snel, Berend, den Hertog, Jeroen, Choo, Andre B.H., Heck, Albert J.R.

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Quantitative Chemical Proteomics Reveals New Potential Drug Targets in Head and Neck Cancer von Wu, Zhixiang, Doondeea, Jessica B., Gholami, Amin Moghaddas, Janning, Melanie C., Lemeer, Simone, Kramer, Karl, Eccles, Suzanne A., Gollin, Susanne M., Grenman, Reidar, Walch, Axel, Feller, Stephan M., Kuster, Bernhard

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