De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis von Haas, Brian J, Papanicolaou, Alexie, Yassour, Moran, Grabherr, Manfred, Blood, Philip D, Bowden, Joshua, Couger, Matthew Brian, Eccles, David, Li, Bo, Lieber, Matthias, MacManes, Matthew D, Ott, Michael, Orvis, Joshua, Pochet, Nathalie, Strozzi, Francesco, Weeks, Nathan, Westerman, Rick, William, Thomas, Dewey, Colin N, Henschel, Robert, LeDuc, Richard D, Friedman, Nir, Regev, Aviv

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The Human Proteoform Atlas: a FAIR community resource for experimentally derived proteoforms von Hollas, Michael A R, Robey, Matthew T, Fellers, Ryan T, LeDuc, Richard D, Thomas, Paul M, Kelleher, Neil L

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Mapping intact protein isoforms in discovery mode using top-down proteomics von Tran, John C., Zamdborg, Leonid, Ahlf, Dorothy R., Lee, Ji Eun, Catherman, Adam D., Durbin, Kenneth R., Tipton, Jeremiah D., Vellaichamy, Adaikkalam, Kellie, John F., Li, Mingxi, Wu, Cong, Sweet, Steve M. M., Early, Bryan P., Siuti, Nertila, LeDuc, Richard D., Compton, Philip D., Thomas, Paul M., Kelleher, Neil L.

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Identification and Quantification of Proteoforms by Mass Spectrometry von Schaffer, Leah V., Millikin, Robert J., Miller, Rachel M., Anderson, Lissa C., Fellers, Ryan T., Ge, Ying, Kelleher, Neil L., LeDuc, Richard D., Liu, Xiaowen, Payne, Samuel H., Sun, Liangliang, Thomas, Paul M., Tucholski, Trisha, Wang, Zhe, Wu, Si, Wu, Zhijie, Yu, Dahang, Shortreed, Michael R., Smith, Lloyd M.

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Grassland-to-cropland conversion increased soil, nutrient, and carbon losses in the US Midwest between 2008 and 2016 von Zhang, Xuesong, Lark, Tyler J, Clark, Christopher M, Yuan, Yongping, LeDuc, Stephen D

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Grasslands, wetlands, and agriculture: the fate of land expiring from the Conservation Reserve Program in the Midwestern United States von Morefield, Philip E, LeDuc, Stephen D, Clark, Christopher M, Iovanna, Richard

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In-Flight Calibration and Performance of the OSIRIS-REx Touch And Go Camera System (TAGCAMS) von Bos, B. J., Nelson, D. S., Pelgrift, J. Y., Liounis, A. J., Doelling, D., Norman, C. D., Olds, R. D., May, C. W., Witherspoon, R., Church, E., Huish, D., Adam, C. D., Sahr, E., Kidd, J., Drozd, K., Owen, W. M., Moreau, M. C., Seals, L. T., Butt, J., LeDuc, D., Alkiek, K., Chevres-Fernandez, L. R., Gordon, K. E., Khlopenkov, K., Haney, C., Bhatt, R., Hikes, J., Wolfram, A., Caplinger, M., Ravine, M. A., Getzandanner, K., Bartels, A., Lauretta, D. S.

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Intra- and inter-spatial variability of meiofauna in hadal trenches is linked to microbial activity and food availability von Shimabukuro, M., Zeppilli, D., Leduc, D., Wenzhöfer, F., Berg, P., Rowden, A. A., Glud, R. N.

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Identification and Characterization of Human Proteoforms by Top-Down LC-21 Tesla FT-ICR Mass Spectrometry von Anderson, Lissa C, DeHart, Caroline J, Kaiser, Nathan K, Fellers, Ryan T, Smith, Donald F, Greer, Joseph B, LeDuc, Richard D, Blakney, Greg T, Thomas, Paul M, Kelleher, Neil L, Hendrickson, Christopher L

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Proteomics Standards Initiative’s ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms von LeDuc, Richard D, Deutsch, Eric W, Binz, Pierre-Alain, Fellers, Ryan T, Cesnik, Anthony J, Klein, Joshua A, Van Den Bossche, Tim, Gabriels, Ralf, Yalavarthi, Arshika, Perez-Riverol, Yasset, Carver, Jeremy, Bittremieux, Wout, Kawano, Shin, Pullman, Benjamin, Bandeira, Nuno, Kelleher, Neil L, Thomas, Paul M, Vizcaíno, Juan Antonio

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Non-invasive tunnel convergence measurement based on distributed optical fiber strain sensing von Piccolo, A, Lecieux, Y, Delepine-Lesoille, S, Leduc, D

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Free-living nematodes of the genus Halomonhystera (Monhysteridae) from the Southwest Pacific region and Ross Sea von Leduc, D

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An informatic framework for decoding protein complexes by top-down mass spectrometry von Skinner, Owen S, Havugimana, Pierre C, Haverland, Nicole A, Fornelli, Luca, Early, Bryan P, Greer, Joseph B, Fellers, Ryan T, Durbin, Kenneth R, Do Vale, Luis H F, Melani, Rafael D, Seckler, Henrique S, Nelp, Micah T, Belov, Mikhail E, Horning, Stevan R, Makarov, Alexander A, LeDuc, Richard D, Bandarian, Vahe, Compton, Philip D, Kelleher, Neil L

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Combinatorial Modification of Human Histone H4 Quantitated by Two-dimensional Liquid Chromatography Coupled with Top Down Mass Spectrometry von Pesavento, James J., Bullock, Courtney R., LeDuc, Richard D., Mizzen, Craig A., Kelleher, Neil L.

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A Method for Label-Free, Differential Top-Down Proteomics von Ntai, Ioanna, Toby, Timothy K., LeDuc, Richard D., Kelleher, Neil L.

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Submarine canyons as 'underground rivers' von Leduc, D.

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Assessing the Impacts of Recent Crop Expansion on Water Quality in the Missouri River Basin Using the Soil and Water Assessment Tool von Chen, Pan, Yuan, Yongping, Li, Wenhong, LeDuc, Stephen D., Lark, Tyler J., Zhang, Xuesong, Clark, Christopher

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ProSight PTM 2.0: improved protein identification and characterization for top down mass spectrometry von Zamdborg, Leonid, LeDuc, Richard D, Glowacz, Kevin J, Kim, Yong-Bin, Viswanathan, Vinayak, Spaulding, Ian T, Early, Bryan P, Bluhm, Eric J, Babai, Shannee, Kelleher, Neil L

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Unusually high food availability in Kaikoura Canyon linked to distinct deep-sea nematode community von Leduc, D., Rowden, A.A., Nodder, S.D., Berkenbusch, K., Probert, P.K., Hadfield, M.G.

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Plant-available organic and mineral nitrogen shift in dominance with forest stand age von LeDuc, Stephen D., Rothstein, David E.

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