ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping von Beghain, Johann, Bridier-Nahmias, Antoine, Le Nagard, Hervé, Denamur, Erick, Clermont, Olivier

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Capturing the mutational landscape of the beta-lactamase TEM-1 von Jacquier, Hervé, Birgy, André, Le Nagard, Hervé, Mechulam, Yves, Schmitt, Emmanuelle, Glodt, Jérémy, Bercot, Beatrice, Petit, Emmanuelle, Poulain, Julie, Barnaud, Guilène, Gros, Pierre-Alexis, Tenaillon, Olivier

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The Evolution of Epistasis and Its Links With Genetic Robustness, Complexity and Drift in a Phenotypic Model of Adaptation von Gros, Pierre-Alexis, Le Nagard, Herve, Tenaillon, Olivier

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Online analysis of in vitro resistance to antimalarial drugs through nonlinear regression von Le Nagard, Hervé, Vincent, Corine, Mentré, France, Le Bras, Jacques

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Glutathione peroxidase-1 gene ( GPX1 ) variants, oxidative stress and risk of kidney complications in people with type 1 diabetes von Mohammedi, Kamel, Patente, Thiago A, Bellili-Muñoz, Naima, Driss, Fathi, Le Nagard, Hervé, Fumeron, Frédéric, Roussel, Ronan, Hadjadj, Samy, Corrêa-Giannella, Maria Lúcia, Marre, Michel, Velho, Gilberto

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Fitness, Stress Resistance, and Extraintestinal Virulence in Escherichia coli von Bleibtreu, Alexandre, Gros, Pierre-Alexis, Laouénan, Cédric, Clermont, Olivier, Le Nagard, Hervé, Picard, Bertrand, Tenaillon, Olivier, Denamur, Erick

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High-Throughput Analysis of Antimalarial Susceptibility Data by the WorldWide Antimalarial Resistance Network (WWARN) In Vitro Analysis and Reporting Tool von WOODROW, Charles J, DAHLSTRÖM, Sabina, MUSSET, Lise, QUASHIE, Neils B, LIM, Pharath, FAIRHURST, Rick M, NSOBYA, Sam L, SINOU, Veronique, NOEDL, Harald, PRADINES, Bruno, JOHNSON, Jacob D, GUERIN, Philippe J, COOKSEY, Richard, SIBLEY, Carol H, LE BRAS, Jacques, FLEGG, Jennifer A, LE NAGARD, Hervé, MENTRÉ, France, MURILLO, Claribel, MÉNARD, Didier, NOSTEN, François, SRIPRAWAT, Kanlaya

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Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections von Levert, Maxime, Zamfir, Oana, Clermont, Olivier, Bouvet, Odile, Lespinats, Sylvain, Hipeaux, Marie Claire, Branger, Catherine, Picard, Bertrand, Saint-Ruf, Claude, Norel, Françoise, Balliau, Thierry, Zivy, Michel, Le Nagard, Hervé, Cruveiller, Stéphane, Cruvellier, Stéphane, Chane-Woon-Ming, Béatrice, Nilsson, Susanna, Gudelj, Ivana, Phan, Katherine, Ferenci, Thomas, Tenaillon, Olivier, Denamur, Erick

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The emergence of complexity and restricted pleiotropy in adapting networks von Le Nagard, Hervé, Chao, Lin, Tenaillon, Olivier

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Advantage of the F2:A1:B- IncF Pandemic Plasmid over IncC Plasmids in In Vitro Acquisition and Evolution of blaCTX-M Gene-Bearing Plasmids in Escherichia coli von Mahérault, Anne-Claire, Kemble, Harry, Magnan, Mélanie, Gachet, Benoit, Roche, David, Le Nagard, Hervé, Tenaillon, Olivier, Denamur, Erick, Branger, Catherine, Landraud, Luce

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Complete Nucleotide Sequence of Plasmid pTN48, Encoding the CTX-M-14 Extended-Spectrum β-Lactamase from an Escherichia coli O102-ST405 Strain von BILLARD-POMARES, Typhaine, TENAILLON, Olivier, LE NAGARD, Herve, ROUY, Zoé, CRUVEILLER, Stephane, MEDIGUE, Claudine, ARLET, Guillaume, DENAMUR, Erick, BRANGER, Catherine

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Mutators, Population Size, Adaptive Landscape and the Adaptation of Asexual Populations of Bacteria von Tenaillon, Olivier, Toupance, Bruno, Le Nagard, Herve, Taddei, Francois, Godelle, Bernard

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PFIM 4.0, an extended R program for design evaluation and optimization in nonlinear mixed-effect models von Dumont, Cyrielle, Lestini, Giulia, Le Nagard, Hervé, Mentré, France, Comets, Emmanuelle, Nguyen, Thu Thuy, group, for the PFIM

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Flux, toxicity, and expression costs generate complex genetic interactions in a metabolic pathway von Kemble, Harry, Eisenhauer, Catherine, Couce, Alejandro, Chapron, Audrey, Magnan, Melanie, Gautier, Gregory, Le Nagard, Herve, Nghe, Philippe, Tenaillon, Olivier

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Plasma extracellular superoxide dismutase concentration, allelic variations in the SOD3 gene and risk of myocardial infarction and all-cause mortality in people with type 1 and typ... von Mohammedi, Kamel, Bellili-Muñoz, Naïma, Marklund, Stefan L, Driss, Fathi, Le Nagard, Hervé, Patente, Thiago A, Fumeron, Frédéric, Roussel, Ronan, Hadjadj, Samy, Marre, Michel, Velho, Gilberto

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Genotype–phenotype correlations in fetuses and neonates with autosomal recessive polycystic kidney disease von Denamur, Erick, Delezoide, Anne-Lise, Alberti, Corinne, Bourillon, Agnès, Gubler, Marie-Claire, Bouvier, Raymonde, Pascaud, Olivier, Elion, Jacques, Grandchamp, Bernard, Michel-Calemard, Laurence, Missy, Pascale, Zaccaria, Isabelle, Le Nagard, Hervé, Gerard, Bénédicte, Loirat, Chantal

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Benefits of a new Metropolis–Hasting based algorithm, in non-linear regression for estimation of ex vivo antimalarial sensitivity in patients infected with two strains von Bauer, Rebecca, Mentré, France, Kaddouri, Halima, Le Bras, Jacques, Le Nagard, Hervé

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Mutators and Sex in Bacteria: Conflict between Adaptive Strategies von Tenaillon, Olivier, Le Nagard, Herve, Godelle, Bernard, Taddei, Francois

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Detection of SARS-CoV-2 N-antigen in blood during acute COVID-19 provides a sensitive new marker and new testing alternatives von Visseaux, Benoit, Laouenan, Cédric, Timsit, Jean-François, Ghosn, Jade, Paul, Christelle, Malvy, Denis, Chirouze, Catherine, Andrejak, Claire, Rossignol, Patrick, Picone, Olivier, Bompart, François, Rossignol, Bénédicte, Bouadma, Lila, Debray, Marie Pierre, Ghosn, Jade, Khalil, Antoine, Lescure, François-Xavier, Mentré, France, Mullaert, Jimmy, Schneider, Marion, Tagherset, Lysa, Tardivon, Coralie, Tellier, Marie Capucine, Trioux, Théo, Angoulvant, François, Kaguelidou, Florentia, Esperou, Hélène, Papadopoulos, Aurélie, Diouf, Alphonsine, Hoctin, Alexandre, Mambert, Marina, Téoulé, François, Le Nagard, Hervé, Lingas, Guillaume, Neant, Nadège, Yazdanpanah, Yazdan, Van Der Werf, Sylvie, Semaille, Caroline, Noret, Marion, Levy, Yves, Wiedemann, Aurélie, Duval, Xavier, Tubiana, Sarah, Abad, Fanny, Abry, Dominique, Alavoine, Loubna, Allain, Jean-Sébastien, Ayala, Sandrine, Boissel, Nolwenn, Botelho-Nevers, Elisabeth, Bouiller, Kévin, Bourgeon, Marilou, Bruneau, Léa, Chabouis, Agnès, Costa, Yolande, Desille-Dugast, Mireille, Elrezzi, Elise, Faurous, William, Gerardin, Patrick, Gerset, Sandrine, Guillemin, Francis, Hartard, Cédric, Hocquet, Didier, Jeulin, Helene, Ledru, Eric, Lefevre, Benjamin, Legrand, Amélie, Legrand, Karine, Lepiller, Quentin, Lepuil, Sévérine, Letienne, Estelle, Malvy, Denis, Marty-Quinternet, Solène, Pagadoy, Maïder, Paris, Adeline, Pierrez, Nathalie, Pistone, Thierry, Reminiac, Cécile, Rousseau, Alexandra, Schoemaecker, Betty, Somers, Stéphanie, Tournier, Anne, Tyrode, Sandrine, Do Thi Thu, Huong, Le Hingrat, Quentin, Descamps, Dianes, Attia, Mikael, Barbet, Marion, Demeret, Caroline, Rose, Thierry, Petres, Stéphane, Piquard, Valentine, Morel, Bruno, Vesval, Thiphaine, Ammour, Douae, Delmas, Christelle, Hendou, Samia, Kouakam, Christelle, Leturque, Nicolas, Laurent, Abel

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Advantage of the F2:A1:B- IncF Pandemic Plasmid over IncC Plasmids in In Vitro Acquisition and Evolution of bla CTX-M Gene-Bearing Plasmids in Escherichia coli von Mahérault, Anne-Claire, Kemble, Harry, Magnan, Mélanie, Gachet, Benoit, Roche, David, Le Nagard, Hervé, Tenaillon, Olivier, Denamur, Erick, Branger, Catherine, Landraud, Luce

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