Alterations of the human gut microbiome in liver cirrhosis von Qin, Nan, Yang, Fengling, Li, Ang, Prifti, Edi, Chen, Yanfei, Shao, Li, Guo, Jing, Le Chatelier, Emmanuelle, Yao, Jian, Wu, Lingjiao, Zhou, Jiawei, Ni, Shujun, Liu, Lin, Pons, Nicolas, Batto, Jean Michel, Kennedy, Sean P., Leonard, Pierre, Yuan, Chunhui, Ding, Wenchao, Chen, Yuanting, Hu, Xinjun, Zheng, Beiwen, Qian, Guirong, Xu, Wei, Ehrlich, S. Dusko, Zheng, Shusen, Li, Lanjuan

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Dissemination of the mcr-1 colistin resistance gene von Ruppé, Etienne, Chatelier, Emmanuelle Le, Pons, Nicolas, Andremont, Antoine, Ehrlich, S Dusko

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Four functional profiles for fibre and mucin metabolism in the human gut microbiome von Labarthe, Simon, Plancade, Sandra, Raguideau, Sebastien, Plaza Oñate, Florian, Le Chatelier, Emmanuelle, Leclerc, Marion, Laroche, Beatrice

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Major depletion of insulin sensitivity-associated taxa in the gut microbiome of persons living with HIV controlled by antiretroviral drugs von Belda, Eugeni, Capeau, Jacqueline, Zucker, Jean-Daniel, Chatelier, Emmanuelle Le, Pons, Nicolas, Oñate, Florian Plaza, Quinquis, Benoit, Alili, Rohia, Fellahi, Soraya, Katlama, Christine, Clément, Karine, Fève, Bruno, Jaureguiberry, Stéphane, Goujard, Cécile, Lambotte, Olivier, Doré, Joël, Prifti, Edi, Bastard, Jean-Philippe

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High engraftment capacity of frozen ready-to-use human fecal microbiota transplants assessed in germ-free mice von Berland, Magali, Cadiou, Julie, Levenez, Florence, Galleron, Nathalie, Quinquis, Benoît, Thirion, Florence, Gauthier, Franck, Le Chatelier, Emmanuelle, Plaza Oñate, Florian, Schwintner, Carole, Rabot, Sylvie, Lepage, Patricia, Ehrlich, Dusko, Doré, Joël, Juste, Catherine

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Interactions of the Bacillus subtilis DnaE polymerase with replisomal proteins modulate its activity and fidelity von Paschalis, Vasileios, Le Chatelier, Emmanuelle, Green, Matthew, Képès, François, Soultanas, Panos, Janniere, Laurent

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Changes in Gut Microbiota of Patients with Atopic Dermatitis During Balneotherapy von Thirion, Florence, Guilly, Susie, Fromentin, Sébastien, Plaza Oñate, Florian, Alvarez, Anne-Sophie, Le Chatelier, Emmanuelle, Pons, Nicolas, Levenez, Florence, Quinquis, Benoît, Ehrlich, Stanislav, Doré, Joel, Martin, Richard, Seité, Sophie

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Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology von Dao, Maria Carlota, Everard, Amandine, Aron-Wisnewsky, Judith, Sokolovska, Nataliya, Prifti, Edi, Verger, Eric O, Kayser, Brandon D, Levenez, Florence, Chilloux, Julien, Hoyles, Lesley, Dumas, Marc-Emmanuel, Rizkalla, Salwa W, Doré, Joel, Cani, Patrice D, Clément, Karine

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Intestinal Akkermansia muciniphila predicts clinical response to PD-1 blockade in patients with advanced non-small-cell lung cancer von Derosa, Lisa, Routy, Bertrand, Thomas, Andrew Maltez, Iebba, Valerio, Zalcman, Gerard, Friard, Sylvie, Mazieres, Julien, Audigier-Valette, Clarisse, Moro-Sibilot, Denis, Goldwasser, François, Silva, Carolina Alves Costa, Terrisse, Safae, Bonvalet, Melodie, Scherpereel, Arnaud, Pegliasco, Hervé, Richard, Corentin, Ghiringhelli, François, Elkrief, Arielle, Desilets, Antoine, Blanc-Durand, Felix, Cumbo, Fabio, Blanco, Aitor, Boidot, Romain, Chevrier, Sandy, Daillère, Romain, Kroemer, Guido, Alla, Laurie, Pons, Nicolas, Le Chatelier, Emmanuelle, Galleron, Nathalie, Roume, Hugo, Dubuisson, Agathe, Bouchard, Nicole, Messaoudene, Meriem, Drubay, Damien, Deutsch, Eric, Barlesi, Fabrice, Planchard, David, Segata, Nicola, Martinez, Stéphanie, Zitvogel, Laurence, Soria, Jean-Charles, Besse, Benjamin

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Major microbiota dysbiosis in severe obesity: fate after bariatric surgery von Aron-Wisnewsky, Judith, Prifti, Edi, Belda, Eugeni, Ichou, Farid, Kayser, Brandon D, Dao, Maria Carlota, Verger, Eric O, Hedjazi, Lyamine, Bouillot, Jean-Luc, Chevallier, Jean-Marc, Pons, Nicolas, Le Chatelier, Emmanuelle, Levenez, Florence, Ehrlich, Stanislav Dusko, Dore, Joel, Zucker, Jean-Daniel, Clément, Karine

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Human gut microbes impact host serum metabolome and insulin sensitivity von Pedersen, Helle Krogh, Gudmundsdottir, Valborg, Nielsen, Henrik Bjørn, Hyotylainen, Tuulia, Nielsen, Trine, Jensen, Benjamin A. H., Forslund, Kristoffer, Hildebrand, Falk, Prifti, Edi, Falony, Gwen, Le Chatelier, Emmanuelle, Levenez, Florence, Doré, Joel, Mattila, Ismo, Plichta, Damian R., Pöhö, Päivi, Hellgren, Lars I., Arumugam, Manimozhiyan, Sunagawa, Shinichi, Vieira-Silva, Sara, Jørgensen, Torben, Holm, Jacob Bak, Trošt, Kajetan, Consortium, MetaHIT, Kristiansen, Karsten, Brix, Susanne, Raes, Jeroen, Wang, Jun, Hansen, Torben, Bork, Peer, Brunak, Søren, Oresic, Matej, Ehrlich, S. Dusko, Pedersen, Oluf

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Towards standards for human fecal sample processing in metagenomic studies von Costea, Paul I, Zeller, Georg, Sunagawa, Shinichi, Pelletier, Eric, Alberti, Adriana, Levenez, Florence, Tramontano, Melanie, Driessen, Marja, Hercog, Rajna, Jung, Ferris-Elias, Kultima, Jens Roat, Hayward, Matthew R, Coelho, Luis Pedro, Allen-Vercoe, Emma, Bertrand, Laurie, Blaut, Michael, Brown, Jillian R M, Carton, Thomas, Cools-Portier, Stéphanie, Daigneault, Michelle, Derrien, Muriel, Druesne, Anne, de Vos, Willem M, Finlay, B Brett, Flint, Harry J, Guarner, Francisco, Hattori, Masahira, Heilig, Hans, Luna, Ruth Ann, van Hylckama Vlieg, Johan, Junick, Jana, Klymiuk, Ingeborg, Langella, Philippe, Le Chatelier, Emmanuelle, Mai, Volker, Manichanh, Chaysavanh, Martin, Jennifer C, Mery, Clémentine, Morita, Hidetoshi, O'Toole, Paul W, Orvain, Céline, Patil, Kiran Raosaheb, Penders, John, Persson, Søren, Pons, Nicolas, Popova, Milena, Salonen, Anne, Saulnier, Delphine, Scott, Karen P, Singh, Bhagirath, Slezak, Kathleen, Veiga, Patrick, Versalovic, James, Zhao, Liping, Zoetendal, Erwin G, Ehrlich, S Dusko, Dore, Joel, Bork, Peer

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Quantitative metagenomics reveals unique gut microbiome biomarkers in ankylosing spondylitis von Wen, Chengping, Zheng, Zhijun, Shao, Tiejuan, Liu, Lin, Xie, Zhijun, Le Chatelier, Emmanuelle, He, Zhixing, Zhong, Wendi, Fan, Yongsheng, Zhang, Linshuang, Li, Haichang, Wu, Chunyan, Hu, Changfeng, Xu, Qian, Zhou, Jia, Cai, Shunfeng, Wang, Dawei, Huang, Yun, Breban, Maxime, Qin, Nan, Ehrlich, Stanislav Dusko

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Dietary intervention impact on gut microbial gene richness von Cotillard, Aurélie, Kennedy, Sean P., Kong, Ling Chun, Prifti, Edi, Pons, Nicolas, Le Chatelier, Emmanuelle, Almeida, Mathieu, Quinquis, Benoit, Levenez, Florence, Galleron, Nathalie, Gougis, Sophie, Rizkalla, Salwa, Batto, Jean-Michel, Renault, Pierre, Doré, Joel, Zucker, Jean-Daniel, Clément, Karine, Ehrlich, Stanislav Dusko

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Systematic analysis of gut microbiome reveals the role of bacterial folate and homocysteine metabolism in Parkinson’s disease von Rosario, Dorines, Bidkhori, Gholamreza, Lee, Sunjae, Bedarf, Janis, Hildebrand, Falk, Le Chatelier, Emmanuelle, Uhlen, Mathias, Ehrlich, Stanislav Dusko, Proctor, Gordon, Wüllner, Ullrich, Mardinoglu, Adil, Shoaie, Saeed

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A microbiota-modulated checkpoint directs immunosuppressive intestinal T cells into cancers von Fidelle, Marine, Rauber, Conrad, Alves Costa Silva, Carolina, Tian, Ai-Ling, Lahmar, Imran, de La Varende, Anne-Laure Mallard, Zhao, Liwei, Thelemaque, Cassandra, Lebhar, Isabelle, Messaoudene, Meriem, Pizzato, Eugenie, Birebent, Roxanne, Mbogning Fonkou, Maxime Descartes, Zoppi, Silvia, Reni, Anna, Dalban, Cécile, Leduc, Marion, Ferrere, Gladys, Durand, Sylvère, Ly, Pierre, Silvin, Aymeric, Mulder, Kevin, Dutertre, Charles-Antoine, Ginhoux, Florent, Yonekura, Satoru, Roberti, Maria Paula, Tidjani-Alou, Maryam, Terrisse, Safae, Chen, Jianzhou, Kepp, Oliver, Schippers, Angela, Wagner, Norbert, Suárez-Gosálvez, Javier, Kobold, Sebastian, Fahrner, Jean-Eudes, Richard, Corentin, Bosq, Jacques, Lordello, Leonardo, Vitali, Giacomo, Galleron, Nathalie, Quinquis, Benoît, Le Chatelier, Emmanuelle, Blanchard, Lucas, Girard, Jean-Philippe, Jarry, Anne, Gervois, Nadine, Godefroy, Emmanuelle, Labarrière, Nathalie, Koschny, Ronald, Daillère, Romain, Besse, Benjamin, Truntzer, Caroline, Ghiringhelli, François, Coatnoan, Nicolas, Mhanna, Vanessa, Klatzmann, David, Drubay, Damien, Albiges, Laurence, Thomas, Andrew Maltez, Segata, Nicola, Danlos, François-Xavier, Marabelle, Aurélien, Routy, Bertrand, Derosa, Lisa, Kroemer, Guido, Zitvogel, Laurence

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MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data von Plaza Oñate, Florian, Le Chatelier, Emmanuelle, Almeida, Mathieu, Cervino, Alessandra C L, Gauthier, Franck, Magoulès, Frédéric, Ehrlich, S Dusko, Pichaud, Matthieu

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OneNet-One network to rule them all: Consensus network inference from microbiome data von Champion, Camille, Momal, Raphaëlle, Le Chatelier, Emmanuelle, Sola, Mathilde, Mariadassou, Mahendra, Berland, Magali

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A catalog of the mouse gut metagenome von Xiao, Liang, Feng, Qiang, Liang, Suisha, Sonne, Si Brask, Xia, Zhongkui, Qiu, Xinmin, Li, Xiaoping, Long, Hua, Zhang, Jianfeng, Zhang, Dongya, Liu, Chuan, Fang, Zhiwei, Chou, Joyce, Glanville, Jacob, Hao, Qin, Kotowska, Dorota, Colding, Camilla, Licht, Tine Rask, Wu, Donghai, Yu, Jun, Sung, Joseph Jao Yiu, Liang, Qiaoyi, Li, Junhua, Jia, Huijue, Lan, Zhou, Tremaroli, Valentina, Dworzynski, Piotr, Nielsen, H Bjørn, Bäckhed, Fredrik, Doré, Joël, Le Chatelier, Emmanuelle, Ehrlich, S Dusko, Lin, John C, Arumugam, Manimozhiyan, Wang, Jun, Madsen, Lise, Kristiansen, Karsten

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A Natural Polyphenol Exerts Antitumor Activity and Circumvents Anti-PD-1 Resistance through Effects on the Gut Microbiota von Messaoudene, Meriem, Pidgeon, Reilly, Richard, Corentin, Ponce, Mayra, Diop, Khoudia, Benlaifaoui, Myriam, Nolin-Lapalme, Alexis, Cauchois, Florent, Malo, Julie, Belkaid, Wiam, Isnard, Stephane, Fradet, Yves, Dridi, Lharbi, Velin, Dominique, Oster, Paul, Raoult, Didier, Ghiringhelli, François, Boidot, Romain, Chevrier, Sandy, Kysela, David T, Brun, Yves V, Falcone, Emilia Liana, Pilon, Geneviève, Oñate, Florian Plaza, Gitton-Quent, Oscar, Le Chatelier, Emmanuelle, Durand, Sylvere, Kroemer, Guido, Elkrief, Arielle, Marette, André, Castagner, Bastien, Routy, Bertrand

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