Case Definitions, Diagnostic Algorithms, and Priorities in Encephalitis: Consensus Statement of the International Encephalitis Consortium von Venkatesan, A., Tunkel, A. R., Bloch, K. C., Lauring, A. S., Sejvar, J., Bitnun, A., Stahl, J-P., Mailles, A., Drebot, M., Rupprecht, C. E., Yoder, J., Cope, J. R., Wilson, M. R., Whitley, R. J., Sullivan, J., Granerod, J., Jones, C., Eastwood, K., Ward, K. N., Durrheim, D. N., Solbrig, M. V., Guo-Dong, L., Glaser, C. A.

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A human coronavirus evolves antigenically to escape antibody immunity von Eguia, Rachel T, Crawford, Katharine H D, Stevens-Ayers, Terry, Kelnhofer-Millevolte, Laurel, Greninger, Alexander L, Englund, Janet A, Boeckh, Michael J, Bloom, Jesse D

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Infectious vaccine-derived rubella viruses emerge, persist, and evolve in cutaneous granulomas of children with primary immunodeficiencies von Perelygina, Ludmila, Chen, Min-Hsin, Suppiah, Suganthi, Adebayo, Adebola, Abernathy, Emily, Dorsey, Morna, Bercovitch, Lionel, Paris, Kenneth, White, Kevin P, Krol, Alfons, Dhossche, Julie, Torshin, Ivan Y, Saini, Natalie, Klimczak, Leszek J, Gordenin, Dmitry A, Zharkikh, Andrey, Plotkin, Stanley, Sullivan, Kathleen E, Icenogle, Joseph

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Complete mapping of viral escape from neutralizing antibodies von Doud, Michael B, Hensley, Scott E, Bloom, Jesse D

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Single cell heterogeneity in influenza A virus gene expression shapes the innate antiviral response to infection von Sun, Jiayi, Vera, J Cristobal, Drnevich, Jenny, Lin, Yen Ting, Ke, Ruian, Brooke, Christopher B

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Intranasal gene therapy to prevent infection by SARS-CoV-2 variants von Sims, Joshua J, Greig, Jenny A, Michalson, Kristofer T, Lian, Sharon, Martino, R Alexander, Meggersee, Rosemary, Turner, Kevin B, Nambiar, Kalyani, Dyer, Cecilia, Hinderer, Christian, Horiuchi, Makoto, Yan, Hanying, Huang, Xin, Chen, Shu-Jen, Wilson, James M

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Identification of genetic variants associated with susceptibility to West Nile virus neuroinvasive disease von Long, D, Deng, X, Singh, P, Loeb, M, Lauring, A S, Seielstad, M

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Outbreaks of SARS-CoV-2 in naturally infected mink farms: Impact, transmission dynamics, genetic patterns, and environmental contamination von Chaintoutis, Serafeim C, Thomou, Zoi, Mouchtaropoulou, Evangelia, Tsiolas, George, Chassalevris, Taxiarchis, Stylianaki, Ioanna, Lagou, Maria, Michailidou, Sofia, Moutou, Evangelia, Koenen, Jacobus Johannes Hendrik, Dijkshoorn, Jacoba Wilhelmina, Paraskevis, Dimitrios, Poutahidis, Theofilos, Siarkou, Victoria I, Sypsa, Vana, Argiriou, Anagnostis, Fortomaris, Paschalis, Dovas, Chrysostomos I

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Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 - 2018 von Hill, Sarah C, de Souza, Renato, Thézé, Julien, Claro, Ingra, Aguiar, Renato S, Abade, Leandro, Santos, Fabiana C P, Cunha, Mariana S, Nogueira, Juliana S, Salles, Flavia C S, Rocco, Iray M, Maeda, Adriana Y, Vasami, Fernanda G S, du Plessis, Louis, Silveira, Paola P, de Jesus, Jaqueline G, Quick, Joshua, Fernandes, Natália C C A, Guerra, Juliana M, Réssio, Rodrigo A, Giovanetti, Marta, Alcantara, Luiz C J, Cirqueira, Cinthya S, Díaz-Delgado, Josué, Macedo, Fernando L L, Timenetsky, Maria do Carmo S T, de Paula, Regiane, Spinola, Roberta, Telles de Deus, Juliana, Mucci, Luís F, Tubaki, Rosa Maria, de Menezes, Regiane M T, Ramos, Patrícia L, de Abreu, Andre L, Cruz, Laura N, Loman, Nick, Dellicour, Simon, Pybus, Oliver G, Sabino, Ester C, Faria, Nuno R

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Identification of a Cellular Cofactor Required for Infection by Feline Leukemia Virus von Anderson, Maria M., Lauring, Adam S., Burns, Cara C., Overbaugh, Julie

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Making genomic surveillance deliver: A lineage classification and nomenclature system to inform rabies elimination von Campbell, Kathryn, Gifford, Robert J, Singer, Joshua, Hill, Verity, O'Toole, Aine, Rambaut, Andrew, Hampson, Katie, Brunker, Kirstyn

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Severe morbidity among hospitalised adults with acute influenza and other respiratory infections: 2014–2015 and 2015–2016 von Segaloff, H. E., Petrie, J. G., Malosh, R. E., Cheng, C. K., McSpadden, E. J., Ferdinands, J. M., Lamerato, L., Lauring, A. S., Monto, A. S., Martin, E. T.

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Dispersal dynamics of SARS-CoV-2 lineages during the first epidemic wave in New York City von Dellicour, Simon, Hong, Samuel L, Vrancken, Bram, Chaillon, Antoine, Gill, Mandev S, Maurano, Matthew T, Ramaswami, Sitharam, Zappile, Paul, Marier, Christian, Harkins, Gordon W, Baele, Guy, Duerr, Ralf, Heguy, Adriana

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PB2 mutations arising during H9N2 influenza evolution in the Middle East confer enhanced replication and growth in mammals von Arai, Yasuha, Kawashita, Norihito, Ibrahim, Madiha Salah, Elgendy, Emad Mohamed, Daidoji, Tomo, Ono, Takao, Takagi, Tatsuya, Nakaya, Takaaki, Matsumoto, Kazuhiko, Watanabe, Yohei

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Defective viral genomes from chikungunya virus are broad-spectrum antivirals and prevent virus dissemination in mosquitoes von Levi, Laura I, Rezelj, Veronica V, Henrion-Lacritick, Annabelle, Erazo, Diana, Boussier, J, Vallet, Thomas, Bernhauerová, Veronika, Suzuki, Yasutsugu, Carrau, Lucia, Weger-Lucarelli, James, Saleh, Maria-Carla, Vignuzzi, Marco

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Predicting the animal hosts of coronaviruses from compositional biases of spike protein and whole genome sequences through machine learning von Brierley, Liam, Fowler, Anna

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High-throughput, single-copy sequencing reveals SARS-CoV-2 spike variants coincident with mounting humoral immunity during acute COVID-19 von Ko, Sung Hee, Bayat Mokhtari, Elham, Mudvari, Prakriti, Stein, Sydney, Stringham, Christopher D, Wagner, Danielle, Ramelli, Sabrina, Ramos-Benitez, Marcos J, Strich, Jeffrey R, Davey, Jr, Richard T, Zhou, Tongqing, Misasi, John, Kwong, Peter D, Chertow, Daniel S, Sullivan, Nancy J, Boritz, Eli A

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Multi-epitope Models Explain How Pre-existing Antibodies Affect the Generation of Broadly Protective Responses to Influenza von Zarnitsyna, Veronika I, Lavine, Jennie, Ellebedy, Ali, Ahmed, Rafi, Antia, Rustom

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Parallel ClickSeq and Nanopore sequencing elucidates the rapid evolution of defective-interfering RNAs in Flock House virus von Jaworski, Elizabeth, Routh, Andrew

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Cellular co-infection can modulate the efficiency of influenza A virus production and shape the interferon response von Martin, Brigitte E, Harris, Jeremy D, Sun, Jiayi, Koelle, Katia, Brooke, Christopher B

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