Optimal dimensionality selection for independent component analysis of transcriptomic data von McConn, John Luke, Lamoureux, Cameron R, Poudel, Saugat, Palsson, Bernhard O, Sastry, Anand V

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Inferred regulons are consistent with regulator binding sequences in E. coli von Qiu, Sizhe, Wan, Xinlong, Liang, Yueshan, Lamoureux, Cameron R, Akbari, Amir, Palsson, Bernhard O, Zielinski, Daniel C

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iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendia von Sastry, Anand V, Yuan, Yuan, Poudel, Saugat, Rychel, Kevin, Yoo, Reo, Lamoureux, Cameron R, Li, Gaoyuan, Burrows, Joshua T, Chauhan, Siddharth, Haiman, Zachary B, Al Bulushi, Tahani, Seif, Yara, Palsson, Bernhard O, Zielinski, Daniel C

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Diagnosis and mitigation of the systemic impact of genome reduction in Escherichia coli DGF-298 von Champie, Antoine, Lachance, Jean-Christophe, Sastry, Anand, Matteau, Dominick, Lloyd, Colton J, Grenier, Frédéric, Lamoureux, Cameron R, Jeanneau, Simon, Feist, Adam M, Jacques, Pierre-Étienne, Palsson, Bernhard O, Rodrigue, Sébastien

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Machine learning uncovers the Pseudomonas syringae transcriptome in microbial communities and during infection von Bajpe, Heera, Rychel, Kevin, Lamoureux, Cameron R, Sastry, Anand V, Palsson, Bernhard O

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Elucidation of independently modulated genes in Streptococcus pyogenes reveals carbon sources that control its expression of hemolytic toxins von Hirose, Yujiro, Poudel, Saugat, Sastry, Anand V, Rychel, Kevin, Lamoureux, Cameron R, Szubin, Richard, Zielinski, Daniel C, Lim, Hyun Gyu, Menon, Nitasha D, Bergsten, Helena, Uchiyama, Satoshi, Hanada, Tomoki, Kawabata, Shigetada, Palsson, Bernhard O, Nizet, Victor

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A multi-scale expression and regulation knowledge base for Escherichia coli von Lamoureux, Cameron R, Decker, Katherine T, Sastry, Anand V, Rychel, Kevin, Gao, Ye, McConn, John Luke, Zielinski, Daniel C, Palsson, Bernhard O

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The Bitome: digitized genomic features reveal fundamental genome organization von Lamoureux, Cameron R, Choudhary, Kumari Sonal, King, Zachary A, Sandberg, Troy E, Gao, Ye, Sastry, Anand V, Phaneuf, Patrick V, Choe, Donghui, Cho, Byung-Kwan, Palsson, Bernhard O

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Escherichia coli non-coding regulatory regions are highly conserved von Lamoureux, Cameron R, Phaneuf, Patrick V, Palsson, Bernhard O, Zielinski, Daniel C

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LABORATORY EXPERIMENT DATA EXPLORATION AND VISUALIZATION von Frezza, Brian M, Fraser, George W, Li, Cheri Y, Villarreal, Sergio I, Valas, Ruben E, Buchman, Hayley E, Sastry, Anand V, Hofler, Catherine L, Hilburg, Shayna L, Cong, Yidan Y, Kleinbaum, Daniel J, Stanley, George N, Choo, Yang, Leung, Jonathan K, Zurek, Paul R, Lamoureux, Cameron R, Ota, Asuka, Robichaud, Guillaume, Yoshikawa, Alex M, Woodson, Wyatt J, Teed, Robert M, Vaithilingam, Srikant, Bond, Bradley M, Baisiwala, Shivani S, McKernan, James R, Webster, Courtney E, Fitzgerald, Sean M, Kline, Ben C

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Laboratory experiment data exploration and visualization von Frezza, Brian M, Fraser, George W, Li, Cheri Y, Villarreal, Sergio I, Valas, Ruben E, Buchman, Hayley E, Sastry, Anand V, Hofler, Catherine L, Hilburg, Shayna L, Cong, Yidan Y, Kleinbaum, Daniel J, Stanley, George N, Choo, Yang, Leung, Jonathan K, Zurek, Paul R, Lamoureux, Cameron R, Ota, Asuka, Robichaud, Guillaume, Yoshikawa, Alex M, Woodson, Wyatt J, Teed, Robert M, Vaithilingam, Srikant, Bond, Bradley M, Baisiwala, Shivani S, McKernan, James R, Webster, Courtney E, Fitzgerald, Sean M, Kline, Ben C

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Laboratory experiment data exploration and visualization von Frezza, Brian M, Fraser, George W, Li, Cheri Y, Villarreal, Sergio I, Valas, Ruben E, Buchman, Hayley E, Sastry, Anand V, Hofler, Catherine L, Hilburg, Shayna L, Cong, Yidan Y, Kleinbaum, Daniel J, Stanley, George N, Choo, Yang, Leung, Jonathan K, Zurek, Paul R, Lamoureux, Cameron R, Ota, Asuka, Robichaud, Guillaume, Yoshikawa, Alex M, Woodson, Wyatt J, Teed, Robert M, Vaithilingam, Srikant, Bond, Bradley M, Baisiwala, Shivani S, McKernan, James R, Webster, Courtney E, Fitzgerald, Sean M, Kline, Ben C

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System and method for management, execution, and analysis of laboratory experiments von Frezza, Brian M, Fraser, George W, Li, Cheri Y, Villarreal, Sergio I, Valas, Ruben E, Buchman, Hayley E, Sastry, Anand V, Hofler, Catherine L, Hilburg, Shayna L, Cong, Yidan Y, Kleinbaum, Daniel J, Stanley, George N, Choo, Yang, Leung, Jonathan K, Zurek, Paul R, Lamoureux, Cameron R, Ota, Asuka, Robichaud, Guillaume, Yoshikawa, Alex M, Woodson, Wyatt J, Teed, Robert M, Vaithilingam, Srikant, Bond, Bradley M, Baisiwala, Shivani S, McKernan, James R, Webster, Courtney E, Fitzgerald, Sean M, Kline, Ben C

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System and method for management, execution, and analysis of laboratory experiments von Frezza, Brian M, Fraser, George W, Li, Cheri Y, Villarreal, Sergio I, Valas, Ruben E, Buchman, Hayley E, Sastry, Anand V, Hofler, Catherine L, Hilburg, Shayna L, Cong, Yidan Y, Kleinbaum, Daniel J, Stanley, George N, Choo, Yang, Leung, Jonathan K, Zurek, Paul R, Lamoureux, Cameron R, Ota, Asuka, Robichaud, Guillaume, Yoshikawa, Alex M, Woodson, Wyatt J, Teed, Robert M, Vaithilingam, Srikant, Bond, Bradley M, Baisiwala, Shivani S, McKernan, James R, Webster, Courtney E, Fitzgerald, Sean M, Kline, Ben C

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Laboratory experiment data exploration and visualization von Frezza, Brian M, Fraser, George W, Li, Cheri Y, Villarreal, Sergio I, Valas, Ruben E, Buchman, Hayley E, Sastry, Anand V, Hofler, Catherine L, Hilburg, Shayna L, Cong, Yidan Y, Kleinbaum, Daniel J, Stanley, George N, Choo, Yang, Leung, Jonathan K, Zurek, Paul R, Lamoureux, Cameron R, Ota, Asuka, Robichaud, Guillaume, Yoshikawa, Alex M, Woodson, Wyatt J, Teed, Robert M, Vaithilingam, Srikant, Bond, Bradley M, Baisiwala, Shivani S, McKernan, James R, Webster, Courtney E, Fitzgerald, Sean M, Kline, Ben C

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Laboratory experiment data exploration and visualization von Frezza, Brian M, Fraser, George W, Li, Cheri Y, Villarreal, Sergio I, Valas, Ruben E, Buchman, Hayley E, Sastry, Anand V, Hofler, Catherine L, Hilburg, Shayna L, Cong, Yidan Y, Kleinbaum, Daniel J, Stanley, George N, Choo, Yang, Leung, Jonathan K, Zurek, Paul R, Lamoureux, Cameron R, Ota, Asuka, Robichaud, Guillaume, Yoshikawa, Alex M, Woodson, Wyatt J, Teed, Robert M, Vaithilingam, Srikant, Bond, Bradley M, Baisiwala, Shivani S, McKernan, James R, Webster, Courtney E, Fitzgerald, Sean M, Kline, Ben C

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SYSTEM AND METHOD FOR MANAGEMENT, EXECUTION, AND ANALYSIS OF LABORATORY EXPERIMENTS von Frezza, Brian M, Fraser, George W, Li, Cheri Y, Villarreal, Sergio I, Valas, Ruben E, Buchman, Hayley E, Sastry, Anand V, Hofler, Catherine L, Hilburg, Shayna L, Cong, Yidan Y, Kleinbaum, Daniel J, Stanley, George N, Choo, Yang, Leung, Jonathan K, Zurek, Paul R, Lamoureux, Cameron R, Ota, Asuka, Robichaud, Guillaume, Yoshikawa, Alex M, Woodson, Wyatt J, Teed, Robert M, Vaithilingam, Srikant, Bond, Bradley M, Baisiwala, Shivani S, McKernan, James R, Webster, Courtney E, Fitzgerald, Sean M, Kline, Ben C

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LABORATORY EXPERIMENT DATA EXPLORATION AND VISUALIZATION von STANLEY, George N, BUCHMAN, Hayley E, VALAS, Ruben E, LI, Cheri Y, CHOO, Yang, CONG, Yidan Y, KLINE, Ben C, WEBSTER, Courtney E, KLEINBAUM, Daniel J, FREZZA, Brian M, HOFLER, Catherine L, MCKERNAN, James R, FITZGERALD, Sean M, OTA, Asuka, LEUNG, Jonathan K, SASTRY, Anand V, ZUREK, Paul, VAITHILINGAM, Srikant, YOSHIKAWA, Alex M, LAMOUREUX, Cameron R, ROBICHAUD, Guillaume, BAISIWALA, Shivani S, WOODSON, Wyatt J, HILBURG, Shayna L, FRASER, George W, TEED, Robert M, VILLARREAL, Sergio I, BOND, Bradley M

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System and method for management, execution, and analysis of laboratory experiments von Frezza, Brian M, Fraser, George W, Li, Cheri Y, Villarreal, Sergio I, Valas, Ruben E, Buchman, Hayley E, Sastry, Anand V, Hofler, Catherine L, Hilburg, Shayna L, Cong, Yidan Y, Kleinbaum, Daniel J, Stanley, George N, Choo, Yang, Leung, Jonathan K, Zurek, Paul R, Lamoureux, Cameron R, Ota, Asuka, Robichaud, Guillaume, Yoshikawa, Alex M, Woodson, Wyatt J, Teed, Robert M, Vaithilingam, Srikant, Bond, Bradley M, Baisiwala, Shivani S, McKernan, James R, Webster, Courtney E, Fitzgerald, Sean M, Kline, Ben C

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Exploration and visualization of laboratory data von BUCHMAN HAYLEY E, OTA ASUKA, FREZZA BRIAN M, WEBSTER COURTNEY E, FITZGERALD SEAN M, FRASER GEORGE W, HILBERG SHAYNA L, KLEINBAUM DANIEL J, VAITHILINGAM, SRIKANTH, MCKERNAN JAMES R, BAISIWALA SHIVANI S, CONG YIDAN Y, ZHOU YAN, SASTRY ANAND V, ZUREK PAUL R, VALAS RUBEN E, LEUNG JONATHAN K, KLINE BEN C, WOODSON WYATT J, YOSHIKAWA ALEX M, STANLEY GEORGE N, VILLARREAL SERGIO I, LAMOUREUX CAMERON R, BOND BRADLEY M, LEE CHIE YING, TEED ROBERT M, HOFLER CATHERINE L, ROBICHAUD GUILLAUME

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