The long-range interaction landscape of gene promoters von Sanyal, Amartya, Lajoie, Bryan R., Jain, Gaurav, Dekker, Job

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A non-canonical Puf3p-binding sequence regulates CAT5/COQ7 mRNA under both fermentable and respiratory conditions in budding yeast von Hayashi, Sachiko, Iwamoto, Kazumi, Yoshihisa, Tohru

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HiC-Pro: an optimized and flexible pipeline for Hi-C data processing von Servant, Nicolas, Varoquaux, Nelle, Lajoie, Bryan R, Viara, Eric, Chen, Chong-Jian, Vert, Jean-Philippe, Heard, Edith, Dekker, Job, Barillot, Emmanuel

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Gcn4 impacts metabolic fluxes to promote yeast chronological lifespan von Gulias, Juan Facundo, Niesi, Florencia, Arán, Martín, Correa-García, Susana, Bermúdez-Moretti, Mariana

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An unbiased, automated platform for scoring dopaminergic neurodegeneration in C. elegans von Clark, Andrew S, Kalmanson, Zachary, Morton, Katherine, Hartman, Jessica, Meyer, Joel, San-Miguel, Adriana

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eIF2A represses cell wall biogenesis gene expression in Saccharomyces cerevisiae von Meyer, Laura, Courtin, Baptiste, Gomard, Maïté, Namane, Abdelkader, Permal, Emmanuelle, Badis, Gwenael, Jacquier, Alain, Fromont-Racine, Micheline

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Foci-forming regions of pyruvate kinase and enolase at the molecular surface incorporate proteins into yeast cytoplasmic metabolic enzymes transiently assembling (META) bodies von Utsumi, Ryotaro, Murata, Yuki, Ito-Harashima, Sayoko, Akai, Misaki, Miura, Natsuko, Kuroda, Kouichi, Ueda, Mitsuyoshi, Kataoka, Michihiko

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Functional classification and validation of yeast prenylation motifs using machine learning and genetic reporters von Berger, Brittany M, Yeung, Wayland, Goyal, Arnav, Zhou, Zhongliang, Hildebrandt, Emily R, Kannan, Natarajan, Schmidt, Walter K

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Tailoring baker's yeast Saccharomyces cerevisiae for functional testing of channelrhodopsin von Höler, Sebastian, Degreif, Daniel, Stix, Florentine, Yang, Shang, Gao, Shiqiang, Nagel, Georg, Moroni, Anna, Thiel, Gerhard, Bertl, Adam, Rauh, Oliver

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pXOOY: A dual-function vector for expression of membrane proteins in Saccharomyces cerevisiae and Xenopus laevis oocytes von Vold, Victoria Amstrup, Glanville, Sebastian, Klaerke, Dan Arne, Pedersen, Per Amstrup

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Large language models: What could they do for neurology? von Lajoie, Guillaume

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Automated analysis of bacterial flow cytometry data with FlowGateNIST von Ross, David

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Targeting Receptor-Mediated Transport for Delivery of Biologics Across the Blood-Brain Barrier von Lajoie, Jason M, Shusta, Eric V

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Spatial Organization of the Mouse Genome and Its Role in Recurrent Chromosomal Translocations von Zhang, Yu, McCord, Rachel Patton, Ho, Yu-Jui, Lajoie, Bryan R., Hildebrand, Dominic G., Simon, Aline C., Becker, Michael S., Alt, Frederick W., Dekker, Job

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Activation of proto-oncogenes by disruption of chromosome neighborhoods von Hnisz, Denes, Weintraub, Abraham S., Day, Daniel S., Valton, Anne-Laure, Bak, Rasmus O., Li, Charles H., Goldmann, Johanna, Lajoie, Bryan R., Fan, Zi Peng, Sigova, Alla A., Reddy, Jessica, Borges-Rivera, Diego, Lee, Tong Ihn, Jaenisch, Rudolf, Porteus, Matthew H., Dekker, Job, Young, Richard A.

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Bioactivity of alginetin, a caramelization product of pectin: Cytometric analysis of rat thymic lymphocytes using fluorescent probes von Doi, Sayaka, Kawamura, Mina, Oyama, Keisuke, Akamatsu, Tetsuya, Mizobuchi, Mizuki, Oyama, Yasuo, Masuda, Toshiya, Kamemura, Norio

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Biocontainment of genetically modified organisms by synthetic protein design von Mandell, Daniel J., Lajoie, Marc J., Mee, Michael T., Takeuchi, Ryo, Kuznetsov, Gleb, Norville, Julie E., Gregg, Christopher J., Stoddard, Barry L., Church, George M.

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The Hitchhiker’s guide to Hi-C analysis: Practical guidelines von Lajoie, Bryan R., Dekker, Job, Kaplan, Noam

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Beyond specialization: re-examining routes of host influence on symbiont evolution von Lajoie, Geneviève, Parfrey, Laura Wegener

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Heterochromatin drives compartmentalization of inverted and conventional nuclei von Falk, Martin, Feodorova, Yana, Naumova, Natalia, Imakaev, Maxim, Lajoie, Bryan R., Leonhardt, Heinrich, Joffe, Boris, Dekker, Job, Fudenberg, Geoffrey, Solovei, Irina, Mirny, Leonid A.

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