Interplay between the Cancer Genome and Epigenome von Shen, Hui, Laird, Peter W.

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Comprehensive characterization, annotation and innovative use of Infinium DNA methylation BeadChip probes von Zhou, Wanding, Laird, Peter W, Shen, Hui

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The Landscape of Microsatellite Instability in Colorectal and Endometrial Cancer Genomes von Kim, Tae-Min, Laird, Peter W., Park, Peter J.

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The power and the promise of DNA methylation markers von Laird, Peter W

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DNA methylation loss in late-replicating domains is linked to mitotic cell division von Zhou, Wanding, Dinh, Huy Q., Ramjan, Zachary, Weisenberger, Daniel J., Nicolet, Charles M., Shen, Hui, Laird, Peter W., Berman, Benjamin P.

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Low-level processing of Illumina Infinium DNA Methylation BeadArrays von Triche, Jr, Timothy J, Weisenberger, Daniel J, Van Den Berg, David, Laird, Peter W, Siegmund, Kimberly D

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DNA methylation as a biomarker for cardiovascular disease risk von Kim, Myungjin, Long, Tiffany I, Arakawa, Kazuko, Wang, Renwei, Yu, Mimi C, Laird, Peter W

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Discovery of multi-dimensional modules by integrative analysis of cancer genomic data von Zhang, Shihua, Liu, Chun-Chi, Li, Wenyuan, Shen, Hui, Laird, Peter W, Zhou, Xianghong Jasmine

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Absolute quantification of somatic DNA alterations in human cancer von Carter, Scott L, Cibulskis, Kristian, Helman, Elena, McKenna, Aaron, Shen, Hui, Zack, Travis, Laird, Peter W, Onofrio, Robert C, Winckler, Wendy, Weir, Barbara A, Beroukhim, Rameen, Pellman, David, Levine, Douglas A, Lander, Eric S, Meyerson, Matthew, Getz, Gad

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Cell division drives DNA methylation loss in late-replicating domains in primary human cells von Endicott, Jamie L., Nolte, Paula A., Shen, Hui, Laird, Peter W.

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Pan-cancer patterns of somatic copy number alteration von Zack, Travis I, Schumacher, Steven E, Carter, Scott L, Cherniack, Andrew D, Saksena, Gordon, Tabak, Barbara, Lawrence, Michael S, Zhang, Cheng-Zhong, Wala, Jeremiah, Mermel, Craig H, Sougnez, Carrie, Gabriel, Stacey B, Hernandez, Bryan, Shen, Hui, Laird, Peter W, Getz, Gad, Meyerson, Matthew, Beroukhim, Rameen

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Association Between Molecular Subtypes of Colorectal Cancer and Patient Survival von Phipps, Amanda I, Limburg, Paul J, Baron, John A, Burnett-Hartman, Andrea N, Weisenberger, Daniel J, Laird, Peter W, Sinicrope, Frank A, Rosty, Christophe, Buchanan, Daniel D, Potter, John D, Newcomb, Polly A

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Principles and challenges of genome-wide DNA methylation analysis von Laird, Peter W

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Whole-genome and multisector exome sequencing of primary and post-treatment glioblastoma reveals patterns of tumor evolution von Kim, Hoon, Zheng, Siyuan, Amini, Seyed S, Virk, Selene M, Mikkelsen, Tom, Brat, Daniel J, Grimsby, Jonna, Sougnez, Carrie, Muller, Florian, Hu, Jian, Sloan, Andrew E, Cohen, Mark L, Van Meir, Erwin G, Scarpace, Lisa, Laird, Peter W, Weinstein, John N, Lander, Eric S, Gabriel, Stacey, Getz, Gad, Meyerson, Matthew, Chin, Lynda, Barnholtz-Sloan, Jill S, Verhaak, Roel G W

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Genome-scale analysis of aberrant DNA methylation in colorectal cancer von Hinoue, Toshinori, Weisenberger, Daniel J, Lange, Christopher P E, Shen, Hui, Byun, Hyang-Min, Van Den Berg, David, Malik, Simeen, Pan, Fei, Noushmehr, Houtan, van Dijk, Cornelis M, Tollenaar, Rob A E M, Laird, Peter W

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DNA methylation in the human cerebral cortex is dynamically regulated throughout the life span and involves differentiated neurons von Siegmund, Kimberly D, Connor, Caroline M, Campan, Mihaela, Long, Tiffany I, Weisenberger, Daniel J, Biniszkiewicz, Detlev, Jaenisch, Rudolf, Laird, Peter W, Akbarian, Schahram

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Environmental epigenetics: prospects for studying epigenetic mediation of exposure–response relationships von Cortessis, Victoria K., Thomas, Duncan C., Levine, A. Joan, Breton, Carrie V., Mack, Thomas M., Siegmund, Kimberly D., Haile, Robert W., Laird, Peter W.

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BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies von Zhou, Wanding, Johnson, Benjamin K, Morrison, Jacob, Beddows, Ian, Eapen, James, Katsman, Efrat, Semwal, Ayush, Habib, Walid Abi, Heo, Lyong, Laird, Peter W, Berman, Benjamin P, Triche, Timothy J, Shen, Hui

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Genome-scale discovery of DNA-methylation biomarkers for blood-based detection of colorectal cancer von Lange, Christopher P E, Campan, Mihaela, Hinoue, Toshinori, Schmitz, Roderick F, van der Meulen-de Jong, Andrea E, Slingerland, Hilde, Kok, Peter J M J, van Dijk, Cornelis M, Weisenberger, Daniel J, Shen, Hui, Tollenaar, Robertus A E M, Laird, Peter W

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A Distinct DNA Methylation Shift in a Subset of Glioma CpG Island Methylator Phenotypes during Tumor Recurrence von de Souza, Camila Ferreira, Sabedot, Thais S., Malta, Tathiane M., Stetson, Lindsay, Morozova, Olena, Sokolov, Artem, Laird, Peter W., Wiznerowicz, Maciej, Iavarone, Antonio, Snyder, James, deCarvalho, Ana, Sanborn, Zachary, McDonald, Kerrie L., Friedman, William A., Tirapelli, Daniela, Poisson, Laila, Mikkelsen, Tom, Carlotti, Carlos G., Kalkanis, Steven, Zenklusen, Jean, Salama, Sofie R., Barnholtz-Sloan, Jill S., Noushmehr, Houtan

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