Disease-associated gut microbiome and metabolome changes in patients with chronic obstructive pulmonary disease von Bowerman, Kate L., Rehman, Saima Firdous, Vaughan, Annalicia, Lachner, Nancy, Budden, Kurtis F., Kim, Richard Y., Wood, David L. A., Gellatly, Shaan L., Shukla, Shakti D., Wood, Lisa G., Yang, Ian A., Wark, Peter A., Hugenholtz, Philip, Hansbro, Philip M.

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Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals von Ormerod, Kate L, Wood, David L A, Lachner, Nancy, Gellatly, Shaan L, Daly, Joshua N, Parsons, Jeremy D, Dal'Molin, Cristiana G O, Palfreyman, Robin W, Nielsen, Lars K, Cooper, Matthew A, Morrison, Mark, Hansbro, Philip M, Hugenholtz, Philip

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Acute graft-versus-host disease is regulated by an IL-17–sensitive microbiome von Varelias, Antiopi, Ormerod, Kate L., Bunting, Mark D., Koyama, Motoko, Gartlan, Kate H., Kuns, Rachel D., Lachner, Nancy, Locke, Kelly R., Lim, Chun Y., Henden, Andrea S., Zhang, Ping, Clouston, Andrew D., Hasnain, Sumaira Z., McGuckin, Michael A., Blazar, Bruce R., MacDonald, Kelli P.A., Hugenholtz, Philip, Hill, Geoffrey R.

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Secreted Toxins From Staphylococcus aureus Strains Isolated From Keratinocyte Skin Cancers Mediate Pro-tumorigenic Inflammatory Responses in the Skin von Krueger, Annika, Zaugg, Julian, Chisholm, Sarah, Linedale, Richard, Lachner, Nancy, Teoh, Siok Min, Tuong, Zewen K, Lukowski, Samuel W, Morrison, Mark, Soyer, H Peter, Hugenholtz, Philip, Hill, Michelle M, Frazer, Ian H

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Continuous pre- and post-transplant exposure to a disease-associated gut microbiome promotes hyper-acute graft-versus-host disease in wild-type mice von Bowerman, Kate L, Varelias, Antiopi, Lachner, Nancy, Kuns, Rachel D, Hill, Geoffrey R, Hugenholtz, Philip

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A Natural History of Actinic Keratosis and Cutaneous Squamous Cell Carcinoma Microbiomes von Wood, David L A, Lachner, Nancy, Tan, Jean-Marie, Tang, Stephanie, Angel, Nicola, Laino, Antonia, Linedale, Richard, Lê Cao, Kim-Anh, Morrison, Mark, Frazer, Ian H, Soyer, H Peter, Hugenholtz, Philip

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Recipient mucosal-associated invariant T cells control GVHD within the colon von Varelias, Antiopi, Bunting, Mark D, Ormerod, Kate L, Koyama, Motoko, Olver, Stuart D, Straube, Jasmin, Kuns, Rachel D, Robb, Renee J, Henden, Andrea S, Cooper, Leanne, Lachner, Nancy, Gartlan, Kate H, Lantz, Olivier, Kjer-Nielsen, Lars, Mak, Jeffrey Yw, Fairlie, David P, Clouston, Andrew D, McCluskey, James, Rossjohn, Jamie, Lane, Steven W, Hugenholtz, Philip, Hill, Geoffrey R

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Reestablishment of Recipient-associated Microbiota in the Lung Allograft Is Linked to Reduced Risk of Bronchiolitis Obliterans Syndrome von WILLNER, Dana L, HUGENHOLTZ, Philip, YERKOVICH, Stephanie T, TAN, Maxine E, DALY, Joshua N, LACHNER, Nancy, HOPKINS, Peter M, CHAMBERS, Daniel C

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Changes in the skin microbiome associated with squamous cell carcinoma in transplant recipients von Krueger, Annika, Zaugg, Julian, Lachner, Nancy, Bialasiewicz, Seweryn, Lin, Lynlee L, Gabizon, Sharon, Sobarun, Priyamvada, Morrison, Mark, Soyer, H Peter, Hugenholtz, Philip, Frazer, Ian H

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Recipient mucosal-associated invariant T cells control graft-versus-host-disease within the colon von Varelias, Antiopi, Bunting, Mark, Ormerod, Kate, Koyama, Motoko, Olver, Stuart, Straube, Jasmin, Kuns, Rachel, Robb, Renee, Henden, Andrea, Cooper, Leanne, Lachner, Nancy, Gartlan, Kate, Lantz, Olivier J., Kjer-Nielsen, Lars, Mak, Jeffrey, Fairlie, David, Clouston, Andrew, McCluskey, James, Rossjohn, Jamie, Lane, Steven, Hugenholtz, Phil, Hill, Geoff

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Near complete genome sequence of the animal feed probiotic, Bacillus amyloliquefaciens H57 von Schofield, Benjamin J, Skarshewski, Adam, Lachner, Nancy, Ouwerkerk, Diane, Klieve, Athol V, Dart, Peter, Hugenholtz, Philip

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Acute graft-versus-host disease is regulated by an IL-17-sensitive microbiome von Varelias, Antiopi, Ormerod, Kate L, Bunting, Mark D, Koyama, Motoko, Gartlan, Kate H, Kuns, Rachel D, Lachner, Nancy, Locke, Kelly R, Lim, Chun Y, Henden, Andrea S, Zhang, Ping, Clouston, Andrew D, Hasnain, Sumaira Z, McGuckin, Michael A, Blazar, Bruce R, MacDonald, Kelli PA, Hugenholtz, Philip, Hill, Geoff R

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In-Solution Fluorescence In Situ Hybridization and Fluorescence-Activated Cell Sorting for Single Cell and Population Genome Recovery von Haroon, Mohamed F., Skennerton, Connor T., Steen, Jason A., Lachner, Nancy, Hugenholtz, Philip, Tyson, Gene W.

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Microbial Metagenomics, Metatranscriptomics, and Metaproteomics von DeLong, Ed

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Secreted Toxins From Staphylococcus aureus Strains Isolated From Keratinocyte Skin Cancers Mediate Pro-tumorigenic Inflammatory Responses in the Skin von Krueger, Annika, Zaugg, Julian, Chisholm, Sarah, Linedale, Richard, Lachner, Nancy, Teoh, Siok Min, Tuong, Zewen K, Lukowski, Samuel W, Morrison, Mark, Soyer, H Peter, Hugenholtz, Philip, Hill, Michelle M, Frazer, Ian H

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Near complete genome sequence of the animal feed probiotic, Bacillus amyloliquefaciens H57 von Schofield, Benjamin J, Skarshewski, Adam, Lachner, Nancy, Ouwerkerk, Diane, Klieve, Athol V, Dart, Peter, Hugenholtz, Philip

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Additional file 15: Figure S8. of Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals von Ormerod, Kate, Wood, David, Lachner, Nancy, Shaan Gellatly, Daly, Joshua, Parsons, Jeremy, Dal’Molin, Cristiana, Palfreyman, Robin, Nielsen, Lars, Cooper, Matthew, Morrison, Mark, Hansbro, Philip, Hugenholtz, Philip

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Additional file 22: Table S11. of Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals von Ormerod, Kate, Wood, David, Lachner, Nancy, Shaan Gellatly, Daly, Joshua, Parsons, Jeremy, Dal’Molin, Cristiana, Palfreyman, Robin, Nielsen, Lars, Cooper, Matthew, Morrison, Mark, Hansbro, Philip, Hugenholtz, Philip

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Additional file 16: Table S8. of Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals von Ormerod, Kate, Wood, David, Lachner, Nancy, Shaan Gellatly, Daly, Joshua, Parsons, Jeremy, Dal’Molin, Cristiana, Palfreyman, Robin, Nielsen, Lars, Cooper, Matthew, Morrison, Mark, Hansbro, Philip, Hugenholtz, Philip

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Additional file 20: Figure S10. of Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals von Ormerod, Kate, Wood, David, Lachner, Nancy, Shaan Gellatly, Daly, Joshua, Parsons, Jeremy, Dal’Molin, Cristiana, Palfreyman, Robin, Nielsen, Lars, Cooper, Matthew, Morrison, Mark, Hansbro, Philip, Hugenholtz, Philip

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