mixOmics: An R package for 'omics feature selection and multiple data integration von Rohart, Florian, Gautier, Benoît, Singh, Amrit, Lê Cao, Kim-Anh

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Multivariate Data Integration Using R: Methods and Applications with the mixOmics Package von LeCao, Kim-Anh Welham, Zoe Marie

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DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays von Singh, Amrit, Shannon, Casey P, Gautier, Benoît, Rohart, Florian, Vacher, Michaël, Tebbutt, Scott J, Lê Cao, Kim-Anh

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Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems von Lê Cao, Kim-Anh, Boitard, Simon, Besse, Philippe

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Intestinal Metaproteomics Reveals Host-Microbiota Interactions in Subjects at Risk for Type 1 Diabetes von Gavin, Patrick G, Mullaney, Jane A, Loo, Dorothy, Cao, Kim-Anh Lê, Gottlieb, Peter A, Hill, Michelle M, Zipris, Danny, Hamilton-Williams, Emma E

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PLSDA-batch: a multivariate framework to correct for batch effects in microbiome data von Wang, Yiwen, Lê Cao, Kim-Anh

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integrOmics: an R package to unravel relationships between two omics datasets von CAO, Kim-Anh Lê, GONZALEZ, Ignacio, DEJEAN, Sébastien

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Biomarker development for axial spondyloarthritis von Brown, Matthew A., Li, Zhixiu, Cao, Kim-Anh Lê

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Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments von Tian, Luyi, Dong, Xueyi, Freytag, Saskia, Lê Cao, Kim-Anh, Su, Shian, JalalAbadi, Abolfazl, Amann-Zalcenstein, Daniela, Weber, Tom S., Seidi, Azadeh, Jabbari, Jafar S., Naik, Shalin H., Ritchie, Matthew E.

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Human hepatocellular carcinomas with a periportal phenotype have the lowest potential for early recurrence after curative resection von Désert, Romain, Rohart, Florian, Canal, Frédéric, Sicard, Marie, Desille, Mireille, Renaud, Stéphanie, Turlin, Bruno, Bellaud, Pascale, Perret, Christine, Clément, Bruno, Lê Cao, Kim‐Anh, Musso, Orlando

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Statistical challenges in longitudinal microbiome data analysis von Kodikara, Saritha, Ellul, Susan, Lê Cao, Kim-Anh

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Altered Repertoire Diversity and Disease‐Associated Clonal Expansions Revealed by T Cell Receptor Immunosequencing in Ankylosing Spondylitis Patients von Hanson, Aimee L., Nel, Hendrik J., Bradbury, Linda, Phipps, Julie, Thomas, Ranjeny, Lê Cao, Kim‐Anh, Kenna, Tony J., Brown, Matthew A.

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How does the early life environment influence the oral microbiome and determine oral health outcomes in childhood? von Adler, Christina Jane, Cao, Kim‐Anh Lê, Hughes, Toby, Kumar, Piyush, Austin, Christine

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MixMC: A Multivariate Statistical Framework to Gain Insight into Microbial Communities von Lê Cao, Kim-Anh, Costello, Mary-Ellen, Lakis, Vanessa Anne, Bartolo, François, Chua, Xin-Yi, Brazeilles, Rémi, Rondeau, Pascale

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A novel approach for biomarker selection and the integration of repeated measures experiments from two assays von Liquet, Benoit, Lê Cao, Kim-Anh, Hocini, Hakim, Thiébaut, Rodolphe

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MINT: a multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms von Rohart, Florian, Eslami, Aida, Matigian, Nicholas, Bougeard, Stéphanie, Lê Cao, Kim-Anh

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Multivariate Analysis of Multiple Datasets: a Practical Guide for Chemical Ecology von Hervé, Maxime R., Nicolè, Florence, Lê Cao, Kim-Anh

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Dietary intake influences gut microbiota development of healthy Australian children from the age of one to two years von Matsuyama, Misa, Morrison, Mark, Cao, Kim-Anh Lê, Pruilh, Solange, Davies, Peter S. W., Wall, Clare, Lovell, Amy, Hill, Rebecca J.

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Genome-wide characterization of the routes to pluripotency von Hussein, Samer M. I., Puri, Mira C., Tonge, Peter D., Benevento, Marco, Corso, Andrew J., Clancy, Jennifer L., Mosbergen, Rowland, Li, Mira, Lee, Dong-Sung, Cloonan, Nicole, Wood, David L. A., Munoz, Javier, Middleton, Robert, Korn, Othmar, Patel, Hardip R., White, Carl A., Shin, Jong-Yeon, Gauthier, Maely E., Cao, Kim-Anh Lê, Kim, Jong-Il, Mar, Jessica C., Shakiba, Nika, Ritchie, William, Rasko, John E. J., Grimmond, Sean M., Zandstra, Peter W., Wells, Christine A., Preiss, Thomas, Seo, Jeong-Sun, Heck, Albert J. R., Rogers, Ian M., Nagy, Andras

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Variable selection in microbiome compositional data analysis von Susin, Antoni, Wang, Yiwen, Lê Cao, Kim-Anh, Calle, M Luz

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