Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates von Kunin, Victor, Engelbrektson, Anna, Ochman, Howard, Hugenholtz, Philip

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CRISPR - a widespread system that provides acquired resistance against phages in bacteria and archaea von Sorek, Rotem, Kunin, Victor, Hugenholtz, Philip

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Defining the core Arabidopsis thaliana root microbiome von Lundberg, Derek S., Lebeis, Sarah L., Paredes, Sur Herrera, Yourstone, Scott, Gehring, Jase, Malfatti, Stephanie, Tremblay, Julien, Engelbrektson, Anna, Kunin, Victor, Rio, Tijana Glavina del, Edgar, Robert C., Eickhorst, Thilo, Ley, Ruth E., Hugenholtz, Philip, Tringe, Susannah Green, Dangl, Jeffery L.

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Experimental factors affecting PCR-based estimates of microbial species richness and evenness von Engelbrektson, Anna, Kunin, Victor, Wrighton, Kelly C, Zvenigorodsky, Natasha, Chen, Feng, Ochman, Howard, Hugenholtz, Philip

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Evolutionary conservation of sequence and secondary structures in CRISPR repeats von Kunin, Victor, Sorek, Rotem, Hugenholtz, Philip

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A Bioinformatician's Guide to Metagenomics von KUNIN, Victor, COPELAND, Alex, LAPIDUS, Alla, MAVROMATIS, Konstantinos, HUGENHOLTZ, Philip

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A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea von Eisen, Jonathan A, Wu, Dongying, Hugenholtz, Philip, Mavromatis, Konstantinos, Pukall, Rüdiger, Dalin, Eileen, Ivanova, Natalia N, Kunin, Victor, Goodwin, Lynne, Wu, Martin, Tindall, Brian J, Hooper, Sean D, Pati, Amrita, Lykidis, Athanasios, Spring, Stefan, Anderson, Iain J, D'haeseleer, Patrik, Zemla, Adam, Singer, Mitchell, Lapidus, Alla, Nolan, Matt, Copeland, Alex, Han, Cliff, Chen, Feng, Cheng, Jan-Fang, Lucas, Susan, Kerfeld, Cheryl, Lang, Elke, Gronow, Sabine, Chain, Patrick, Bruce, David, Rubin, Edward M, Kyrpides, Nikos C, Klenk, Hans-Peter

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Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities von Hugenholtz, Philip, Martín, Héctor García, Ivanova, Natalia, Kunin, Victor, Warnecke, Falk, Barry, Kerrie W, McHardy, Alice C, Yeates, Christine, He, Shaomei, Salamov, Asaf A, Szeto, Ernest, Dalin, Eileen, Putnam, Nik H, Shapiro, Harris J, Pangilinan, Jasmyn L, Rigoutsos, Isidore, Kyrpides, Nikos C, Blackall, Linda Louise, McMahon, Katherine D

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The net of life: reconstructing the microbial phylogenetic network von Kunin, Victor, Goldovsky, Leon, Darzentas, Nikos, Ouzounis, Christos A

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korarchaeal genome reveals insights into the evolution of the Archaea von Elkins, James G, Podar, Mircea, Graham, David E, Makarova, Kira S, Wolf, Yuri, Randau, Lennart, Hedlund, Brian P, Brochier-Armanet, Céline, Kunin, Victor, Anderson, Iain, Lapidus, Alla, Goltsman, Eugene, Barry, Kerrie, Koonin, Eugene V, Hugenholtz, Phil, Kyrpides, Nikos, Wanner, Gerhard, Richardson, Paul, Keller, Martin, Stetter, Karl O

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The balance of driving forces during genome evolution in prokaryotes von Kunin, Victor, Ouzounis, Christos A

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A bacterial metapopulation adapts locally to phage predation despite global dispersal von Kunin, Victor, He, Shaomei, Warnecke, Falk, Peterson, S Brook, Garcia Martin, Hector, Haynes, Matthew, Ivanova, Natalia, Blackall, Linda L, Breitbart, Mya, Rohwer, Forest, McMahon, Katherine D, Hugenholtz, Philip

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Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge von He, Shaomei, Kunin, Victor, Haynes, Matthew, Martin, Hector Garcia, Ivanova, Natalia, Rohwer, Forest, Hugenholtz, Philip, McMahon, Katherine D

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Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii von Mavromatis, Konstantinos, Ivanova, Natalia, Anderson, Iain, Lykidis, Athanasios, Hooper, Sean D, Sun, Hui, Kunin, Victor, Lapidus, Alla, Hugenholtz, Philip, Patel, Bharat, Kyrpides, Nikos C

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Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat von Hugenholtz, Philip, Kunin, Victor, Raes, Jeroen, Harris, J Kirk, Spear, John R, Walker, Jeffrey J, Ivanova, Natalia, von Mering, Christian, Bebout, Brad M, Pace, Norman R, Bork, Peer

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Denoising inferred functional association networks obtained by gene fusion analysis von Kamburov, Atanas, Goldovsky, Leon, Freilich, Shiri, Kapazoglou, Aliki, Kunin, Victor, Enright, Anton J, Tsaftaris, Athanasios, Ouzounis, Christos A

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Clustering the annotation space of proteins von Kunin, Victor, Ouzounis, Christos A

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Expansion of the BioCyc collection of pathway/genome databases to 160 genomes von Karp, Peter D., Ouzounis, Christos A., Moore-Kochlacs, Caroline, Goldovsky, Leon, Kaipa, Pallavi, Ahrén, Dag, Tsoka, Sophia, Darzentas, Nikos, Kunin, Victor, López-Bigas, Núria

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Effects of OTU Clustering and PCR Artifacts on Microbial Diversity Estimates von Patin, Nastassia V., Kunin, Victor, Lidström, Ulrika, Ashby, Matthew N.

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A minimal estimate for the gene content of the last universal common ancestor—exobiology from a terrestrial perspective von Ouzounis, Christos A., Kunin, Victor, Darzentas, Nikos, Goldovsky, Leon

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