An immunoproteomic approach to characterize the CAR interactome and signalosome von Ramello, Maria C, Benzaïd, Ismahène, Kuenzi, Brent M, Lienlaf-Moreno, Maritza, Kandell, Wendy M, Santiago, Daniel N, Pabón-Saldaña, Mibel, Darville, Lancia, Fang, Bin, Rix, Uwe, Yoder, Sean, Berglund, Anders, Koomen, John M, Haura, Eric B, Abate-Daga, Daniel

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De novo generation of multi-target compounds using deep generative chemistry von Munson, Brenton P., Chen, Michael, Bogosian, Audrey, Kreisberg, Jason F., Licon, Katherine, Abagyan, Ruben, Kuenzi, Brent M., Ideker, Trey

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IGF-binding proteins secreted by cancer-associated fibroblasts induce context-dependent drug sensitization of lung cancer cells von Remsing Rix, Lily L, Sumi, Natalia J, Hu, Qianqian, Desai, Bina, Bryant, Annamarie T, Li, Xueli, Welsh, Eric A, Fang, Bin, Kinose, Fumi, Kuenzi, Brent M, Chen, Y Ann, Antonia, Scott J, Lovly, Christine M, Koomen, John M, Haura, Eric B, Marusyk, Andriy, Rix, Uwe

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Proteome-wide Profiling of Clinical PARP Inhibitors Reveals Compound-Specific Secondary Targets von Knezevic, Claire E., Wright, Gabriela, Remsing Rix, Lily L., Kim, Woosuk, Kuenzi, Brent M., Luo, Yunting, Watters, January M., Koomen, John M., Haura, Eric B., Monteiro, Alvaro N., Radu, Caius, Lawrence, Harshani R., Rix, Uwe

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A census of pathway maps in cancer systems biology von Kuenzi, Brent M., Ideker, Trey

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Chemoproteomics Reveals Novel Protein and Lipid Kinase Targets of Clinical CDK4/6 Inhibitors in Lung Cancer von Sumi, Natalia J, Kuenzi, Brent M, Knezevic, Claire E, Remsing Rix, Lily L, Rix, Uwe

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Off-target based drug repurposing opportunities for tivantinib in acute myeloid leukemia von Kuenzi, Brent M., Remsing Rix, Lily L., Kinose, Fumi, Kroeger, Jodi L., Lancet, Jeffrey E., Padron, Eric, Rix, Uwe

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Predicting Drug Response and Synergy Using a Deep Learning Model of Human Cancer Cells von Kuenzi, Brent M., Park, Jisoo, Fong, Samson H., Sanchez, Kyle S., Lee, John, Kreisberg, Jason F., Ma, Jianzhu, Ideker, Trey

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GSK3 Alpha and Beta Are New Functionally Relevant Targets of Tivantinib in Lung Cancer Cells von Remsing Rix, Lily L, Kuenzi, Brent M, Luo, Yunting, Remily-Wood, Elizabeth, Kinose, Fumi, Wright, Gabriela, Li, Jiannong, Koomen, John M, Haura, Eric B, Lawrence, Harshani R, Rix, Uwe

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Escape Excel: A tool for preventing gene symbol and accession conversion errors von Welsh, Eric A, Stewart, Paul A, Kuenzi, Brent M, Eschrich, James A

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Author Correction: A census of pathway maps in cancer systems biology von Kuenzi, Brent M., Ideker, Trey

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Unraveling the rewired network von Palve, Vinayak, Kuenzi, Brent M., Rix, Uwe

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Polypharmacology-based ceritinib repurposing using integrated functional proteomics von Kuenzi, Brent M, Remsing Rix, Lily L, Stewart, Paul A, Fang, Bin, Kinose, Fumi, Bryant, Annamarie T, Boyle, Theresa A, Koomen, John M, Haura, Eric B, Rix, Uwe

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Author Correction: A multilineage screen identifies actionable synthetic lethal interactions in human cancers von Fong, Samson H, Kuenzi, Brent M, Mattson, Nicole M, Lee, John, Sanchez, Kyle, Bojorquez-Gomez, Ana, Ford, Kyle, Munson, Brenton P, Licon, Katherine, Bergendahl, Sarah, Shen, John Paul, Kreisberg, Jason F, Mali, Prashant, Hager, Jeffrey H, White, Michael A, Ideker, Trey

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A multilineage screen identifies actionable synthetic lethal interactions in human cancers von Fong, Samson H., Kuenzi, Brent M., Mattson, Nicole M., Lee, John, Sanchez, Kyle, Bojorquez-Gomez, Ana, Ford, Kyle, Munson, Brenton P., Licon, Katherine, Bergendahl, Sarah, Shen, John Paul, Kreisberg, Jason F., Mali, Prashant, Hager, Jeffrey H., White, Michael A., Ideker, Trey

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Targeting the BRD4-HOXB13 Coregulated Transcriptional Networks with Bromodomain-Kinase Inhibitors to Suppress Metastatic Castration-Resistant Prostate Cancer von Nerlakanti, Niveditha, Yao, Jiqiang, Nguyen, Duy T, Patel, Ami K, Eroshkin, Alexey M, Lawrence, Harshani R, Ayaz, Muhammad, Kuenzi, Brent M, Agarwal, Neha, Chen, Yunyun, Gunawan, Steven, Karim, Rezaul M, Berndt, Norbert, Puskas, John, Magliocco, Anthony M, Coppola, Domenico, Dhillon, Jasreman, Zhang, Jingsong, Shymalagovindarajan, Subramaniam, Rix, Uwe, Kim, Youngchul, Perera, Ranjan, Lawrence, Nicholas J, Schonbrunn, Ernst, Mahajan, Kiran

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Functional Proteomics and Deep Network Interrogation Reveal a Complex Mechanism of Action of Midostaurin in Lung Cancer Cells von Ctortecka, Claudia, Palve, Vinayak, Kuenzi, Brent M., Fang, Bin, Sumi, Natalia J., Izumi, Victoria, Novakova, Silvia, Kinose, Fumi, Remsing Rix, Lily L., Haura, Eric B., Koomen, John Matthew, Rix, Uwe

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Ceritinib Enhances the Efficacy of Trametinib in BRAF/NRAS -Wild-Type Melanoma Cell Lines von Verduzco, Daniel, Kuenzi, Brent M, Kinose, Fumi, Sondak, Vernon K, Eroglu, Zeynep, Rix, Uwe, Smalley, Keiran S M

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The Galaxy Platform for Reproducible Affinity Proteomic Mass Spectrometry Data Analysis von Stewart, Paul A., Kuenzi, Brent M., Mehta, Subina, Kumar, Praveen, Johnson, James E., Jagtap, Pratik, Griffin, Timothy J., Haura, Eric B.

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APOSTL: An Interactive Galaxy Pipeline for Reproducible Analysis of Affinity Proteomics Data von Kuenzi, Brent M, Borne, Adam L, Li, Jiannong, Haura, Eric B, Eschrich, Steven A, Koomen, John M, Rix, Uwe, Stewart, Paul A

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