PASSEL: The PeptideAtlas SRMexperiment library von Farrah, Terry, Deutsch, Eric W., Kreisberg, Richard, Sun, Zhi, Campbell, David S., Mendoza, Luis, Kusebauch, Ulrike, Brusniak, Mi-Youn, Hüttenhain, Ruth, Schiess, Ralph, Selevsek, Nathalie, Aebersold, Ruedi, Moritz, Robert L.

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CloudForest: A Scalable and Efficient Random Forest Implementation for Biological Data von Bressler, Ryan, Kreisberg, Richard B, Bernard, Brady, Niederhuber, John E, Vockley, Joseph G, Shmulevich, Ilya, Knijnenburg, Theo A

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Methods for visual mining of genomic and proteomic data atlases von Boyle, John, Kreisberg, Richard, Bressler, Ryan, Killcoyne, Sarah

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Environment‐responsive transcription factors bind subtelomeric elements and regulate gene silencing von Smith, Jennifer J, Miller, Leslie R, Kreisberg, Richard, Vazquez, Laura, Wan, Yakun, Aitchison, John D

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Comprehensive molecular characterization of gastric adenocarcinoma von Bass, Adam J

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The Somatic Genomic Landscape of Glioblastoma von Brennan, Cameron W., Noushmehr, Houtan, Salama, Sofie R., Berman, Samuel H., Beroukhim, Rameen, Wu, Chang-Jiun, Yung, W.K., Sougnez, Carrie, Finocchiaro, Gaetano, O’Neill, Brian P., Myers, Jerome, Weisenberger, Daniel J., Penny, Robert, Marra, Marco, Meyerson, Matthew, Chin, Lynda, Ostrom, Quinn, Wolinsky, Yingli, Black, Keith L., Boulos, Madgy, Brown, Jenn, Czerinski, Christine, Koyfman, Yakov, Rabeno, Brenda, Auman, J.Todd, Lee, Semin, Kalkanis, Steven, Mikkelsen, Tom, Scarpace, Lisa, Reynolds, Sheila, Curley, Erin, Morris, Scott, Yena, Peggy, Cuppini, Lucia, Maderna, Emanuela, Pollo, Bianca, Hoadley, Katherine A., Shi, Yan, Topal, Michael D., Aksoy, B. Arman, Antipin, Yevgeniy, Borsu, Laetitia, Brennan, Cameron W., Gao, Jianjiong, Jacobsen, Anders, Ladanyi, Marc, Lash, Alex, Liang, Yupu, Chen, Qing-Rong, Shaw, Kenna R. Mills, Eckman, John, Eley, Greg, Jensen, Mark A., Kahn, Ari, Pot, David A., Wan, Yunhu, Hansen, Nathan, Hothi, Parvi, Lau, Ching, Cherniack, Andrew D., Noble, Mike, Cibulskis, Kristian, Frazer, Scott, Gabriel, Stacey B., Gehlenborg, Nils, Gentry, Jeff, Heiman, David, Lander, Eric S., Mallard, Will, Meyerson, Matthew, Getz, Gad, Dees, Nathan N., Fulton, Robert S., Kanchi, Krishna-Latha, Devine, Karen, Carlin, Daniel, Ellrott, Kyle, Haussler, David, Ng, Sam, Salama, Sofie R., Waltman, Peter, Zhu, Jing, Frentzen, Barbara, Friedman, William, McTiernan, Raquel, Perou, Charles M., Akbani, Rehan, Aldape, Kenneth, Bogler, Oliver, Fuller, Gregory N., Mills, Gordon, Protopopov, Alexei, Wu, Chang-Jiun, Weinstein, John N., Verhaak, Roel G.W., Noushmehr, Houtan, Triche, Timothy J., Laird, Peter W., VanMeir, Erwin G., Brat, Daniel

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PASSEL: The PeptideAtlas SRM Experiment Library von Farrah, Terry, Deutsch, Eric W., Kreisberg, Richard, Sun, Zhi, Campbell, David S., Mendoza, Luis, Kusebauch, Ulrike, Brusniak, Mi-Youn, Hüttenhain, Ruth, Schiess, Ralph, Selevsek, Nathalie, Aebersold, Ruedi, Moritz, Robert L.

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Gene-pair expression signatures reveal lineage control von Heinäniemi, Merja, Nykter, Matti, Kramer, Roger, Wienecke-Baldacchino, Anke, Sinkkonen, Lasse, Zhou, Joseph Xu, Kreisberg, Richard, Kauffman, Stuart A, Huang, Sui, Shmulevich, Ilya

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Fastbreak: a tool for analysis and visualization of structural variations in genomic data von Bressler, Ryan, Lin, Jake, Eakin, Andrea, Robinson, Thomas, Kreisberg, Richard, Rovira, Hector, Knijnenburg, Theo, Boyle, John, Shmulevich, Ilya

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Gene pair signatures in cell type transcriptomes reveal lineage control von Heinäniemi, Merja, Nykter, Matti, Kramer, Roger, Wienecke-Baldacchino, Anke, Sinkkonen, Lasse, Zhou, Joseph Xu, Kreisberg, Richard, Kauffman, Stuart A., Huang, Sui, Shmulevich, Ilya

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POMO--Plotting Omics analysis results for Multiple Organisms von Lin, Jake, Kreisberg, Richard, Kallio, Aleksi, Dudley, Aimée M, Nykter, Matti, Shmulevich, Ilya, May, Patrick, Autio, Reija

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Interfacing a scientific echosounder with a cabled ocean observatory von Barbee, David H., Horne, John K., Urmy, Samuel S., Kreisberg, Richard B.

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Swimbladders under pressure: anatomical and acoustic responses by walleye pollock von Horne, John K., Sawada, Kouichi, Abe, Koki, Kreisberg, Richard B., Barbee, David H., Sadayasu, Kazuhiro

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PASSEL : The P eptide A tlas SRM experiment library von Farrah, Terry, Deutsch, Eric W., Kreisberg, Richard, Sun, Zhi, Campbell, David S., Mendoza, Luis, Kusebauch, Ulrike, Brusniak, Mi‐Youn, Hüttenhain, Ruth, Schiess, Ralph, Selevsek, Nathalie, Aebersold, Ruedi, Moritz, Robert L.

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PASSEL: The PeptideAtlas SRM experiment library: TARGETED PROTEOMICS von FARRAH, Terry, DEUTSCH, Eric W, SELEVSEK, Nathalie, AEBERSOLD, Ruedi, MORITZ, Robert L, KREISBERG, Richard, ZHI SUN, CAMPBELL, David S, MENDOZA, Luis, KUSEBAUCH, Ulrike, BRUSNIAK, Mi-Youn, HÜTTENHAIN, Ruth, SCHIESS, Ralph

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Fastbreak: a tool for analysis and visualization of structural variations in genomic data: Doc 23 von Bressler, Ryan, Lin, Jake, Eakin, Andrea, Robinson, Thomas, Kreisberg, Richard, Rovira, Hector, Knijnenburg, Theo, Boyle, John, Shmulevich, Ilya

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CloudForest: A Scalable and Efficient Random Forest Implementation for Biological Data von Bressler, Ryan, Kreisberg, Richard B, Bernard, Brady, Niederhuber, John E, Vockley, Joseph G, Shmulevich, Ilya, Knijnenburg, Theo A

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POMO - Plotting Omics analysis results for Multiple Organisms von Lin, Jake, Kreisberg, Richard, Kallio, Aleksi, Dudley, Aimñe M, Nykter, Matti, Shmulevich, Ilya, May, Patrick, Autio, Reija

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Gene-pair expression signatures reveal lineage control von Heinaniemi, Merja, Nykter, Matti, Kramer, Roger, Wienecke-Baldacchino, Anke, Sinkkonen, Lasse, Zhou, Joseph Xu, Kreisberg, Richard, Kauffman, Stuart A, Huang, Sui, Shmulevich, Ilya

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The condition-dependent transcriptional landscape of Burkholderia pseudomallei von Ooi, Wen Fong, Ong, Catherine, Nandi, Tannistha, Kreisberg, Jason F, Chua, Hui Hoon, Sun, Guangwen, Chen, Yahua, Mueller, Claudia, Conejero, Laura, Eshaghi, Majid, Ang, Roy Moh Lik, Liu, Jianhua, Sobral, Bruno W, Korbsrisate, Sunee, Gan, Yunn Hwen, Titball, Richard W, Bancroft, Gregory J, Valade, Eric, Tan, Patrick

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