MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads von Uliano-Silva, Marcela, Ferreira, João Gabriel R N, Krasheninnikova, Ksenia, Formenti, Giulio, Abueg, Linelle, Torrance, James, Myers, Eugene W, Durbin, Richard, Blaxter, Mark, McCarthy, Shane A

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Chromosomer: a reference-based genome arrangement tool for producing draft chromosome sequences von Tamazian, Gaik, Dobrynin, Pavel, Krasheninnikova, Ksenia, Komissarov, Aleksey, Koepfli, Klaus-Peter, O'Brien, Stephen J

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Whole-Genome Analysis of Mycobacterium tuberculosis from Patients with Tuberculous Spondylitis, Russia von Chernyaeva, Ekaterina, Rotkevich, Mikhail, Krasheninnikova, Ksenia, Yurchenko, Andrey, Vyazovaya, Anna, Mokrousov, Igor, Solovieva, Natalia, Zhuravlev, Viacheslav, Yablonsky, Piotr, O'Brien, Stephen J

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Whole Genome Sequencing and Re-sequencing of the Sable Antelope ( Hippotragus niger ): A Resource for Monitoring Diversity in ex Situ and in Situ Populations von Koepfli, Klaus-Peter, Tamazian, Gaik, Wildt, David, Dobrynin, Pavel, Kim, Changhoon, Frandsen, Paul B, Godinho, Raquel, Yurchenko, Andrey A, Komissarov, Aleksey, Krasheninnikova, Ksenia, Kliver, Sergei, Kolchanova, Sofia, Gonçalves, Margarida, Carneiro, Miguel, Pinto, Pedro Vaz, Ferrand, Nuno, Maldonado, Jesús E, Ferrie, Gina M, Chemnick, Leona, Ryder, Oliver A, Johnson, Warren E, Comizzoli, Pierre, O'Brien, Stephen J, Pukazhenthi, Budhan S

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A chromosomal reference genome sequence for the malaria mosquito, Anopheles marshallii , Theobald, 1903 von Makanga, Boris K, Ayala, Diego, Rahola, Nil, Bouafou, Lemonde B A, Johnson, Harriet F, Heaton, Haynes, Wagah, Martin G, Collins, Joanna C, Krasheninnikova, Ksenia, Pelan, Sarah E, Pointon, Damon-Lee B, Sims, Ying, Torrance, James W, Tracey, Alan, Uliano-Silva, Marcela, Wood, Jonathan M D, von Wyschetzki, Katharina, McCarthy, Shane A, Neafsey, Daniel E, Makunin, Alex, Lawniczak, Mara K N

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Chromosomal reference genome sequences for the malaria mosquito, Anopheles coustani , Laveran, 1900 von Bouafou, Lemonde B A, Ayala, Diego, Makanga, Boris K, Rahola, Nil, Johnson, Harriet F, Heaton, Haynes, Wagah, Martin G, Collins, Joanna C, Krasheninnikova, Ksenia, Pelan, Sarah E, Pointon, Damon-Lee B, Sims, Ying, Torrance, James W, Tracey, Alan, Uliano-Silva, Marcela, Wood, Jonathan M D, von Wyschetzki, Katharina, McCarthy, Shane A, Neafsey, Daniel E, Makunin, Alex, Lawniczak, Mara K N

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The genome sequence of the malaria mosquito, Anopheles funestus , Giles, 1900 von Ayala, Diego, Akone-Ella, Ousman, Kengne, Pierre, Johnson, Harriet, Heaton, Haynes, Collins, Joanna, Krasheninnikova, Ksenia, Pelan, Sarah, Pointon, Damon-Lee, Sims, Ying, Torrance, James, Tracey, Alan, Uliano-Silva, Marcela, von Wyschetzki, Katharina, Wood, Jonathan, McCarthy, Shane, Neafsey, Daniel, Makunin, Alex, Lawniczak, Mara

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Genomic Variations in Drug Resistant Mycobacterium tuberculosis Strains Collected from Patients with Different Localization of Infection von Chernyaeva, Ekaterina, Rotkevich, Mikhail, Krasheninnikova, Ksenia, Lapidus, Alla, Polev, Dmitrii E., Solovieva, Natalia, Zhuravlev, Viacheslav, Yablonsky, Piotr, O'Brien, Stephen J.

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A chromosomal reference genome sequence for the malaria mosquito, Anopheles moucheti , Evans, 1925 von Nsango, Sandrine N, Agbor, Jean-Pierre, Ayala, Diego, Johnson, Harriet F, Heaton, Haynes, Wagah, Martin G, Collins, Joanna C, Krasheninnikova, Ksenia, Pelan, Sarah E, Pointon, Damon-Lee B, Sims, Ying, Torrance, James W, Tracey, Alan, Uliano Da Silva, Marcela, Wood, Jonathan M D, von Wyschetzki, Katharina, McCarthy, Shane A, Neafsey, Daniel E, Makunin, Alex, Lawniczak, Mara

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A chromosomal reference genome sequence for the malaria mosquito, Anopheles gambiae , Giles, 1902, Ifakara strain von Habtewold, Tibebu, Wagah, Martin, Tambwe, Mgeni Mohamed, Moore, Sarah, Windbichler, Nikolai, Christophides, George, Johnson, Harriet, Heaton, Haynes, Collins, Joanna, Krasheninnikova, Ksenia, Pelan, Sarah E, Pointon, Damon-Lee B, Sims, Ying, Torrance, James W, Tracey, Alan, Uliano Da Silva, Marcela, Wood, Jonathan Md, von Wyschetzki, Katharina, McCarthy, Shane A, Neafsey, Daniel E, Makunin, Alex, Lawniczak, Mara K N, Lawniczak, Mara

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Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola von Grigorev, Kirill, Kliver, Sergey, Dobrynin, Pavel, Komissarov, Aleksey, Wolfsberger, Walter, Krasheninnikova, Ksenia, Afanador-Hernández, Yashira M, Brandt, Adam L, Paulino, Liz A, Carreras, Rosanna, Rodríguez, Luis E, Núñez, Adrell, Brandt, Jessica R, Silva, Filipe, Hernández-Martich, J David, Majeske, Audrey J, Antunes, Agostinho, Roca, Alfred L, O'Brien, Stephen J, Martínez-Cruzado, Juan Carlos, Oleksyk, Taras K

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Genomic legacy of the African cheetah, Acinonyx jubatus von Dobrynin, Pavel, Liu, Shiping, Tamazian, Gaik, Xiong, Zijun, Yurchenko, Andrey A, Krasheninnikova, Ksenia, Kliver, Sergey, Schmidt-Küntzel, Anne, Koepfli, Klaus-Peter, Johnson, Warren, Kuderna, Lukas F K, García-Pérez, Raquel, Manuel, Marc de, Godinez, Ricardo, Komissarov, Aleksey, Makunin, Alexey, Brukhin, Vladimir, Qiu, Weilin, Zhou, Long, Li, Fang, Yi, Jian, Driscoll, Carlos, Antunes, Agostinho, Oleksyk, Taras K, Eizirik, Eduardo, Perelman, Polina, Roelke, Melody, Wildt, David, Diekhans, Mark, Marques-Bonet, Tomas, Marker, Laurie, Bhak, Jong, Wang, Jun, Zhang, Guojie, O'Brien, Stephen J

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halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments von Krasheninnikova, Ksenia, Diekhans, Mark, Armstrong, Joel, Dievskii, Aleksei, Paten, Benedict, O'Brien, Stephen

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Pangolin genomes and the evolution of mammalian scales and immunity von Choo, Siew Woh, Rayko, Mike, Tan, Tze King, Hari, Ranjeev, Komissarov, Aleksey, Wee, Wei Yee, Yurchenko, Andrey A, Kliver, Sergey, Tamazian, Gaik, Antunes, Agostinho, Wilson, Richard K, Warren, Wesley C, Koepfli, Klaus-Peter, Minx, Patrick, Krasheninnikova, Ksenia, Kotze, Antoinette, Dalton, Desire L, Vermaak, Elaine, Paterson, Ian C, Dobrynin, Pavel, Sitam, Frankie Thomas, Rovie-Ryan, Jeffrine J, Johnson, Warren E, Yusoff, Aini Mohamed, Luo, Shu-Jin, Karuppannan, Kayal Vizi, Fang, Gang, Zheng, Deyou, Gerstein, Mark B, Lipovich, Leonard, O'Brien, Stephen J, Wong, Guat Jah

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Fine mapping of the Cepaea nemoralis shell colour and mid-banded loci using a high-density linkage map von Johansen, Margrethe, Saenko, Suzanne, Schilthuizen, Menno, Blaxter, Mark, Davison, Angus

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Genome-wide sequence analyses of ethnic populations across Russia von Zhernakova, Daria V., Brukhin, Vladimir, Malov, Sergey, Oleksyk, Taras K., Koepfli, Klaus Peter, Zhuk, Anna, Dobrynin, Pavel, Kliver, Sergei, Cherkasov, Nikolay, Tamazian, Gaik, Rotkevich, Mikhail, Krasheninnikova, Ksenia, Evsyukov, Igor, Sidorov, Sviatoslav, Gorbunova, Anna, Chernyaeva, Ekaterina, Shevchenko, Andrey, Kolchanova, Sofia, Komissarov, Alexei, Simonov, Serguei, Antonik, Alexey, Logachev, Anton, Polev, Dmitrii E., Pavlova, Olga A., Glotov, Andrey S., Ulantsev, Vladimir, Noskova, Ekaterina, Davydova, Tatyana K., Sivtseva, Tatyana M., Limborska, Svetlana, Balanovsky, Oleg, Osakovsky, Vladimir, Novozhilov, Alexey, Puzyrev, Valery, O'Brien, Stephen J.

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Draft de novo Genome Assembly of the Elusive Jaguarundi, Puma yagouaroundi von Tamazian, Gaik, Dobrynin, Pavel, Zhuk, Anna, Zhernakova, Daria V, Perelman, Polina L, Serdyukova, Natalia A, Graphodatsky, Alexander S, Komissarov, Aleksey, Kliver, Sergei, Cherkasov, Nikolay, Scott, Alan F, Mohr, David W, Koepfli, Klaus-Peter, O’Brien, Stephen J, Krasheninnikova, Ksenia

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Chromosome-Length Assembly of the Baikal Seal ( Pusa sibirica ) Genome Reveals a Historically Large Population Prior to Isolation in Lake Baikal von Yakupova, Aliya, Tomarovsky, Andrey, Totikov, Azamat, Beklemisheva, Violetta, Logacheva, Maria, Perelman, Polina L, Komissarov, Aleksey, Dobrynin, Pavel, Krasheninnikova, Ksenia, Tamazian, Gaik, Serdyukova, Natalia A, Rayko, Mike, Bulyonkova, Tatiana, Cherkasov, Nikolay, Pylev, Vladimir, Peterfeld, Vladimir, Penin, Aleksey, Balanovska, Elena, Lapidus, Alla, Dna Zoo Consortium, OBrien, Stephen J, Graphodatsky, Alexander, Koepfli, Klaus-Peter, Kliver, Sergei

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A chromosomal reference genome sequence for the malaria mosquito, Anopheles gambiae, Giles, 1902, Ifakara strain [version 2; peer review: 2 approved] von Ying Sims, Shane A. McCarthy, Damon-Lee B. Pointon, Jonathan MD Wood, James W. Torrance, Harriet Johnson, Ksenia Krasheninnikova, Haynes Heaton, Joanna Collins, Alan Tracey, Mara Lawniczak, Marcela Uliano Da Silva, Katharina von Wyschetzki, Alex Makunin, Daniel E. Neafsey, Mara K.N. Lawniczak, Tibebu Habtewold, Mgeni Mohamed Tambwe, Martin Wagah, Nikolai Windbichler, Sarah Moore, Sarah E. Pelan, George Christophides

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A chromosomal reference genome sequence for the malaria mosquito, Anopheles nili, Theobald, 1904 von Nsango, Sandrine Eveline, Ayala, Diego, Agbor, Jean-Pierre, Johnson, Harriet F., Heaton, Haynes, Wagah, Martin G., Collins, Joanna C, Krasheninnikova, Ksenia, Pelan, Sarah E., Pointon, Damon-Lee B., Sims, Ying, Torrance, James W., Tracey, Alan, Uliano-Silva, Marcela, Wood, Jonathan M.D., von Wyschetzki, Katharina, McCarthy, Shane A., Neafsey, Daniel E., Makunin, Alex, Lawniczak, Mara K.N.

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