Systemic innate immune activation in food protein–induced enterocolitis syndrome von Goswami, Ritobrata, PhD, Blazquez, Ana Belen, PhD, Kosoy, Roman, PhD, Rahman, Adeeb, PhD, Nowak-Węgrzyn, Anna, MD, PhD, Berin, M. Cecilia, PhD

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Complexity and biosemiotics in evolutionary ecology of zoonotic infectious agents von Kosoy, Michael, Kosoy, Roman

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Genetics of the human microglia regulome refines Alzheimer’s disease risk loci von Kosoy, Roman, Fullard, John F., Zeng, Biao, Bendl, Jaroslav, Dong, Pengfei, Rahman, Samir, Kleopoulos, Steven P., Shao, Zhiping, Girdhar, Kiran, Humphrey, Jack, de Paiva Lopes, Katia, Charney, Alexander W., Kopell, Brian H., Raj, Towfique, Bennett, David, Kellner, Christopher P., Haroutunian, Vahram, Hoffman, Gabriel E., Roussos, Panos

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Ancestry informative marker sets for determining continental origin and admixture proportions in common populations in America von Kosoy, Roman, Nassir, Rami, Tian, Chao, White, Phoebe A., Butler, Lesley M., Silva, Gabriel, Kittles, Rick, Alarcon‐Riquelme, Marta E., Gregersen, Peter K., Belmont, John W., De La Vega, Francisco M., Seldin, Michael F.

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Transcriptional Profiling of Egg Allergy and Relationship to Disease Phenotype von Kosoy, Roman, Agashe, Charuta, Grishin, Alexander, Leung, Donald Y, Wood, Robert A, Sicherer, Scott H, Jones, Stacie M, Burks, A Wesley, Davidson, Wendy F, Lindblad, Robert W, Dawson, Peter, Merad, Miriam, Kidd, Brian A, Dudley, Joel T, Sampson, Hugh A, Berin, M Cecilia

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Analysis of East Asia genetic substructure using genome-wide SNP arrays von Tian, Chao, Kosoy, Roman, Lee, Annette, Ransom, Michael, Belmont, John W, Gregersen, Peter K, Seldin, Michael F

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Multi-ancestry eQTL meta-analysis of human brain identifies candidate causal variants for brain-related traits von Zeng, Biao, Bendl, Jaroslav, Kosoy, Roman, Fullard, John F., Hoffman, Gabriel E., Roussos, Panos

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Relationship between hysterectomy and admixture in African American women von Qi, Lihong, PhD, Nassir, Rami, PhD, Kosoy, Roman, PhD, Garcia, Lorena, PhD, Waetjen, L. Elaine, MD, Ochs-Balcom, Heather M., PhD, Gass, Margery, MD, Robbins, John, MD, Seldin, Michael F., MD, PhD

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Ulcerative colitis is characterized by a plasmablast-skewed humoral response associated with disease activity von Uzzan, Mathieu, Martin, Jerome C., Mesin, Luka, Livanos, Alexandra E., Castro-Dopico, Tomas, Huang, Ruiqi, Petralia, Francesca, Magri, Giuliana, Kumar, Shashi, Zhao, Qing, Rosenstein, Adam K., Tokuyama, Minami, Sharma, Keshav, Ungaro, Ryan, Kosoy, Roman, Jha, Divya, Fischer, Jeremy, Singh, Harpriya, Keir, Mary E., Ramamoorthi, Nandhini, O’Gorman, William E., Cohen, Benjamin L., Rahman, Adeeb, Cossarini, Francesca, Seki, Akihiro, Leyre, Louise, Vaquero, Sonia Tejedor, Gurunathan, Sakteesh, Grasset, Emilie K., Losic, Bojan, Dubinsky, Marla, Greenstein, Alexander J., Gottlieb, Zoe, Legnani, Peter, George, James, Irizar, Haritz, Stojmirovic, Aleksandar, Brodmerkel, Carrie, Kasarkis, Andrew, Sands, Bruce E., Furtado, Glaucia, Lira, Sergio A., Tuong, Zewen K., Ko, Huaibin M., Cerutti, Andrea, Elson, Charles O., Clatworthy, Menna R., Merad, Miriam, Suárez-Fariñas, Mayte, Argmann, Carmen, Hackney, Jason A., Victora, Gabriel D., Randolph, Gwendalyn J., Kenigsberg, Ephraim, Colombel, Jean Frederic, Mehandru, Saurabh

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Intestinal Inflammation Modulates the Expression of ACE2 and TMPRSS2 and Potentially Overlaps With the Pathogenesis of SARS-CoV-2–related Disease von Suárez-Fariñas, Mayte, Tokuyama, Minami, Wei, Gabrielle, Huang, Ruiqi, Livanos, Alexandra, Jha, Divya, Levescot, Anais, Irizar, Haritz, Kosoy, Roman, Cording, Sascha, Wang, Wenhui, Losic, Bojan, Ungaro, Ryan C., Di’Narzo, Antonio, Martinez-Delgado, Gustavo, Suprun, Maria, Corley, Michael J., Stojmirovic, Aleksandar, Houten, Sander M., Peters, Lauren, Curran, Mark, Brodmerkel, Carrie, Perrigoue, Jacqueline, Friedman, Joshua R., Hao, Ke, Schadt, Eric E., Zhu, Jun, Ko, Huaibin M., Cho, Judy, Dubinsky, Marla C., Sands, Bruce E., Ndhlovu, Lishomwa, Cerf-Bensusan, Nadine, Kasarskis, Andrew, Colombel, Jean-Frederic, Harpaz, Noam, Argmann, Carmen, Mehandru, Saurabh

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Automated cell type discovery and classification through knowledge transfer von Lee, Hao-Chih, Kosoy, Roman, Becker, Christine E, Dudley, Joel T, Kidd, Brian A

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Biopsy and blood-based molecular biomarker of inflammation in IBD von Argmann, Carmen, Hou, Ruixue, Ungaro, Ryan C, Irizar, Haritz, Al-Taie, Zainab, Huang, Ruiqi, Kosoy, Roman, Venkat, Swati, Song, Won-Min, Di'Narzo, Antonio F, Losic, Bojan, Hao, Ke, Peters, Lauren, Comella, Phillip H, Wei, Gabrielle, Atreja, Ashish, Mahajan, Milind, Iuga, Alina, Desai, Prerak T, Branigan, Patrick, Stojmirovic, Aleksandar, Perrigoue, Jacqueline, Brodmerkel, Carrie, Curran, Mark, Friedman, Joshua R, Hart, Amy, Lamousé-Smith, Esi, Wehkamp, Jan, Mehandru, Saurabh, Schadt, Eric E, Sands, Bruce E, Dubinsky, Marla C, Colombel, Jean-Frederic, Kasarskis, Andrew, Suárez-Fariñas, Mayte

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Integrative Analysis of the Inflammatory Bowel Disease Serum Metabolome Improves Our Understanding of Genetic Etiology and Points to Novel Putative Therapeutic Targets von Di'Narzo, Antonio F., Houten, Sander M., Kosoy, Roman, Huang, Ruiqi, Vaz, Frédéric M., Hou, Ruixue, Wei, Gabrielle, Wang, Wenhui, Comella, Phillip H., Dodatko, Tetyana, Rogatsky, Eduard, Stojmirovic, Aleksandar, Brodmerkel, Carrie, Perrigoue, Jacqueline, Hart, Amy, Curran, Mark, Friedman, Joshua R., Zhu, Jun, Agrawal, Manasi, Cho, Judy, Ungaro, Ryan, Dubinsky, Marla C., Sands, Bruce E., Suárez-Fariñas, Mayte, Schadt, Eric E., Colombel, Jean-Frédéric, Kasarskis, Andrew, Hao, Ke, Argmann, Carmen

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Tyk2 protein-coding variants protect against rheumatoid arthritis and autoimmunity, with no evidence of major pleiotropic effects on non-autoimmune complex traits von Diogo, Dorothée, Bastarache, Lisa, Liao, Katherine P., Graham, Robert R., Fulton, Robert S., Greenberg, Jeffrey D., Eyre, Steve, Bowes, John, Cui, Jing, Lee, Annette, Pappas, Dimitrios A., Kremer, Joel M., Barton, Anne, Coenen, Marieke J. H., Franke, Barbara, Kiemeney, Lambertus A., Mariette, Xavier, Richard-Miceli, Corrine, Canhao, Helena, Fonseca, João, de Vries, Niek, Tak, Paul P., Crusius, J. Bart A., Nurmohamed, Michael T., Kurreeman, Fina, Mikuls, Ted R., Okada, Yukinori, Stahl, Eli A., Larson, David E., Deluca, Tracie L., O'Laughlin, Michelle, Fronick, Catrina C., Fulton, Lucinda L., Kosoy, Roman, Ransom, Michael, Bhangale, Tushar R., Ortmann, Ward, Cagan, Andrew, Gainer, Vivian, Karlson, Elizabeth W., Kohane, Isaac, Murphy, Shawn N., Martin, Javier, Zhernakova, Alexandra, Klareskog, Lars, Padyukov, Leonid, Worthington, Jane, Mardis, Elaine R., Seldin, Michael F., Gregersen, Peter K., Behrens, Timothy, Raychaudhuri, Soumya, Denny, Joshua C., Plenge, Robert M.

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Lineage specific 3D genome structure in the adult human brain and neurodevelopmental changes in the chromatin interactome von Rahman, Samir, Dong, Pengfei, Apontes, Pasha, Fernando, Michael B, Kosoy, Roman, Townsley, Kayla G, Girdhar, Kiran, Bendl, Jaroslav, Shao, Zhiping, Misir, Ruth, Tsankova, Nadia, Kleopoulos, Steven P, Brennand, Kristen J, Fullard, John F, Roussos, Panos

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Neuronal, glial and microglial maps of epigenetic and transcriptomics dysregulations in Alzheimer’s disease von Bendl, Jaroslav, Girdhar, Kiran, Hauberg, Mads E, Zeng, Biao, Kosoy, Roman, Dong, Pengfei, Rahman, Samir, Kleopoulos, Steven P, Voloudakis, Georgios, Hoffman, Gabriel E, Fullard, John F, Roussos, Panos

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Gut microbiota density influences host physiology and is shaped by host and microbial factors von Contijoch, Eduardo J, Britton, Graham J, Yang, Chao, Mogno, Ilaria, Li, Zhihua, Ng, Ruby, Llewellyn, Sean R, Hira, Sheela, Johnson, Crystal, Rabinowitz, Keren M, Barkan, Revital, Dotan, Iris, Hirten, Robert P, Fu, Shih-Chen, Luo, Yuying, Yang, Nancy, Luong, Tramy, Labrias, Philippe R, Lira, Sergio, Peter, Inga, Grinspan, Ari, Clemente, Jose C, Kosoy, Roman, Kim-Schulze, Seunghee, Qin, Xiaochen, Castillo, Anabella, Hurley, Amanda, Atreja, Ashish, Rogers, Jason, Fasihuddin, Farah, Saliaj, Merjona, Nolan, Amy, Reyes-Mercedes, Pamela, Rodriguez, Carina, Aly, Sarah, Santa-Cruz, Kenneth, Peters, Lauren, Suárez-Fariñas, Mayte, Huang, Ruiqi, Hao, Ke, Zhu, Jun, Zhang, Bin, Losic, Bojan, Irizar, Haritz, Song, Won-Min, Di Narzo, Antonio, Wang, Wenhui, Cohen, Benjamin L, DiMaio, Christopher, Greenwald, David, Itzkowitz, Steven, Lucas, Aimee, Marion, James, Maser, Elana, Ungaro, Ryan, Naymagon, Steven, Novak, Joshua, Shah, Brijen, Ullman, Thomas, Rubin, Peter, George, James, Legnani, Peter, Telesco, Shannon E, Friedman, Joshua R, Brodmerkel, Carrie, Plevy, Scott, Cho, Judy H, Colombel, Jean-Frederic, Schadt, Eric E, Argmann, Carmen, Dubinsky, Marla, Kasarskis, Andrew, Sands, Bruce, Faith, Jeremiah J

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Activity-Dependent Transcriptional Program in NGN2+ Neurons Enriched for Genetic Risk for Brain-Related Disorders von Ma, Yixuan, Bendl, Jaroslav, Hartley, Brigham J., Fullard, John F., Abdelaal, Rawan, Ho, Seok-Man, Kosoy, Roman, Gochman, Peter, Rapoport, Judith, Hoffman, Gabriel E., Brennand, Kristen J., Roussos, Panos

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A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus von Graham, Robert R, Kosoy, Roman, Sun, Xin, Rantapää-Dahlqvist, Solbritt, Baechler, Emily C, Lee, Annette, Syvänen, Ann-Christine, Kimberly, Robert P, Behrens, Timothy W, Sturfelt, Gunnar, Criswell, Lindsey A, Gateva, Vesela, Edberg, Jeffrey C, Padyukov, Leonid, McGwin, Gerald, Ferreira, Ricardo C, Gunnarsson, Iva, Sandling, Johanna K, Bengtsson, Anders A, Hom, Geoff, Reveille, John D, Jönsen, Andreas, Gregersen, Peter K, Seldin, Michael F, Taylor, Kimberly E, Chung, Sharon A, Petri, Michelle A, Svenungsson, Elisabet, Vilá, Luis M, Rönnblom, Lars, Alarcón, Graciela S, Nordmark, Gunnel, Manzi, Susan, Brown, Elizabeth E, Ortmann, Ward, Ramsey-Goldman, Rosalind

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Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis von Seldin, Michael F, Liu, Xiangdong, Invernizzi, Pietro, Lu, Yue, Kosoy, Roman, Lu, Yan, Bianchi, Ilaria, Podda, Mauro, Xu, Chun, Xie, Gang, Macciardi, Fabio, Selmi, Carlo, Lupoli, Sara, Shigeta, Russell, Ransom, Michael, Lleo, Ana, Lee, Annette T, Mason, Andrew L, Myers, Robert P, Peltekian, Kevork M, Ghent, Cameron N, Bernuzzi, Francesca, Zuin, Massimo, Rosina, Floriano, Borghesio, Elisabetta, Floreani, Annarosa, Lazzari, Roberta, Niro, Grazia, Andriulli, Angelo, Muratori, Luigi, Muratori, Paolo, Almasio, Piero L, Andreone, Pietro, Margotti, Marzia, Brunetto, Maurizia, Coco, Barbara, Alvaro, Domenico, Bragazzi, Maria C, Marra, Fabio, Pisano, Alessandro, Rigamonti, Cristina, Colombo, Massimo, Marzioni, Marco, Benedetti, Antonio, Fabris, Luca, Strazzabosco, Mario, Portincasa, Piero, Palmieri, Vincenzo O, Tiribelli, Claudio, Croce, Lory, Bruno, Savino, Rossi, Sonia, Vinci, Maria, Prisco, Cleofe, Mattalia, Alberto, Toniutto, Pierluigi, Picciotto, Antonio, Galli, Andrea, Ferrari, Carlo, Colombo, Silvia, Casella, Giovanni, Morini, Lorenzo, Caporaso, Nicola, Colli, Agostino, Spinzi, Giancarlo, Montanari, Renzo, Gregersen, Peter K, Heathcote, E Jenny, Hirschfield, Gideon M, Siminovitch, Katherine A, Amos, Christopher I, Gershwin, M Eric

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