Skani enables accurate and efficient genome comparison for modern metagenomic datasets

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Assessing microbial genome representation across various reference databases: A comprehensive evaluation von Boldirev, G., Sharma, N., Munteanu, V., Bhavatharini, A., Koslicki, D., Zelikovsky, A., Mangul, S.

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ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition von Koslicki, D, Chatterjee, S, Shahrivar, D, Walker, A.W, Francis, S.C, Fraser, L.J, Vehkaperä, M, Lan, Y, Corander, J

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SEK: sparsity exploiting k-mer-based estimation of bacterial community composition von Chatterjee, S, Koslicki, D, Dong, S, Innocenti, N, Cheng, L, Lan, Y, Vehkaperä, M, Skoglund, M, Rasmussen, L.K, Aurell, E, Corander, J

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Technology dictates algorithms: recent developments in read alignment von Alser, Mohammed, Rotman, Jeremy, Deshpande, Dhrithi, Taraszka, Kodi, Shi, Huwenbo, Baykal, Pelin Icer, Yang, Harry Taegyun, Xue, Victor, Knyazev, Sergey, Singer, Benjamin D, Balliu, Brunilda, Koslicki, David, Skums, Pavel, Zelikovsky, Alex, Alkan, Can, Mutlu, Onur, Mangul, Serghei

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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software von Sczyrba, Alexander, Hofmann, Peter, Belmann, Peter, Koslicki, David, Janssen, Stefan, Dröge, Johannes, Gregor, Ivan, Majda, Stephan, Fiedler, Jessika, Dahms, Eik, Bremges, Andreas, Fritz, Adrian, Garrido-Oter, Ruben, Jørgensen, Tue Sparholt, Shapiro, Nicole, Blood, Philip D, Gurevich, Alexey, Bai, Yang, Turaev, Dmitrij, DeMaere, Matthew Z, Chikhi, Rayan, Nagarajan, Niranjan, Quince, Christopher, Meyer, Fernando, Balvočiūtė, Monika, Hansen, Lars Hestbjerg, Sørensen, Søren J, Chia, Burton K H, Denis, Bertrand, Froula, Jeff L, Wang, Zhong, Egan, Robert, Don Kang, Dongwan, Cook, Jeffrey J, Deltel, Charles, Beckstette, Michael, Lemaitre, Claire, Peterlongo, Pierre, Rizk, Guillaume, Lavenier, Dominique, Wu, Yu-Wei, Singer, Steven W, Jain, Chirag, Strous, Marc, Klingenberg, Heiner, Meinicke, Peter, Barton, Michael D, Lingner, Thomas, Lin, Hsin-Hung, Liao, Yu-Chieh, Silva, Genivaldo Gueiros Z, Cuevas, Daniel A, Edwards, Robert A, Saha, Surya, Piro, Vitor C, Renard, Bernhard Y, Pop, Mihai, Klenk, Hans-Peter, Göker, Markus, Kyrpides, Nikos C, Woyke, Tanja, Vorholt, Julia A, Schulze-Lefert, Paul, Rubin, Edward M, Darling, Aaron E, Rattei, Thomas, McHardy, Alice C

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An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges von Fecho, Karamarie, Bizon, Chris, Issabekova, Tursynay, Moxon, Sierra, Thessen, Anne E., Abdollahi, Shervin, Baranzini, Sergio E., Belhu, Basazin, Byrd, William E., Chung, Lawrence, Crouse, Andrew, Duby, Marc P., Ferguson, Stephen, Foksinska, Aleksandra, Forero, Laura, Friedman, Jennifer, Gardner, Vicki, Glusman, Gwênlyn, Hadlock, Jennifer, Hanspers, Kristina, Hinderer, Eugene, Hobbs, Charlotte, Hyde, Gregory, Huang, Sui, Koslicki, David, Mease, Philip, Muller, Sandrine, Mungall, Christopher J., Ramsey, Stephen A., Roach, Jared, Rubin, Irit, Schurman, Shepherd H., Shalev, Anath, Smith, Brett, Soman, Karthik, Stemann, Sarah, Su, Andrew I., Ta, Casey, Watkins, Paul B., Williams, Mark D., Wu, Chunlei, Xu, Colleen H.

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Technology dictates algorithms: Recent developments in read alignment von Alser, Mohammed, Rotman, Jeremy, Taraszka, Kodi, Shi, Huwenbo, Baykal, Pelin Icer, Yang, Harry Taegyun, Xue, Victor, Knyazev, Sergey, Singer, Benjamin D, Balliu, Brunilda, Koslicki, David, Skums, Pavel, Zelikovsky, Alex, Alkan, Can, Mutlu, Onur, Serghei Mangul

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Benchmark data sets, software results and reference data for the first CAMI challenge von Sczyrba, Alexander, Hofman, Peter, Belmann, Peter, Koslicki, David, Janssen, Stefan, Dröge, Johannes, Gregor, Ivan, Majda, Stephan, Fiedler, Jessika, Dahms, Eik, Bremges, Andreas, Fritz, Adrian, Garrido-Oter, Ruben, Jørgensen, Tue Sparholt, Shapiro, Nicole, Blood, Philip D., Gurevich, Alexey, Bai, Yang, Turaev, Dmitrij, DeMaere, Matthew Z., Rayan Chikhi, Niranjan Nagarajan, Quince, Christopher, Meyer, Fernando, Balvočiūtė, Monika, Hansen, Lars Hestbjerg, Sørensen, Søren J., Chia, Burton K. H., Denis, Bertrand, Froula, Jeff L., Wang, Zhong, Egan, Robert, Dongwan Don Kang, Cook, Jeffrey J., Deltel, Charles, Beckstette, Michael, Lemaitre, Claire, Peterlongo, Pierre, Rizk, Guillaume, Lavenier, Dominique, Wu, Yu-Wei, Singer, Steven W., Chirag Jain, Strous, Marc, Klingenberg, Heiner, Meinicke, Peter, Barton, Michael, Lingner, Thomas, Hsin-Hung Lin, Yu-Chieh Liao, Genivaldo Gueiros Z. Silva, Cuevas, Daniel A., Edwards, Robert A., Saha, Surya, Vitor C. Piro, Renard, Bernhard Y., Pop, Mihai, Hans-Peter Klenk, Göker, Markus, Kyrpides, Nikos C., Woyke, Tanja, Vorholt, Julia A., Schulze-Lefert, Paul, Rubin, Edward M., Darling, Aaron E., Rattei, Thomas, McHardy, Alice C.

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