Functional Long Non-coding RNAs Evolve from Junk Transcripts von Palazzo, Alexander F., Koonin, Eugene V.

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Multiple origins of viral capsid proteins from cellular ancestors von Krupovic, Mart, Koonin, Eugene V.

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Viruses and mobile elements as drivers of evolutionary transitions von Koonin, Eugene V.

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Evolutionary plasticity and functional versatility of CRISPR systems von Koonin, Eugene V, Makarova, Kira S

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Origin of eukaryotes from within archaea, archaeal eukaryome and bursts of gene gain: eukaryogenesis just made easier? von Koonin, Eugene V.

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Functional and evolutionary implications of gene orthology von Gabaldón, Toni, Koonin, Eugene V.

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Ongoing global and regional adaptive evolution of SARS-CoV-2 von Rochman, Nash D., Wolf, Yuri I., Faure, Guilhem, Mutz, Pascal, Zhang, Feng, Koonin, Eugene V.

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COG database update: focus on microbial diversity, model organisms, and widespread pathogens von Galperin, Michael Y, Wolf, Yuri I, Makarova, Kira S, Vera Alvarez, Roberto, Landsman, David, Koonin, Eugene V

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Circular RNAs from linear viral RNA genomes: A distinct dimension in the virus world von Koonin, Eugene V

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Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids von Kazlauskas, Darius, Varsani, Arvind, Koonin, Eugene V., Krupovic, Mart

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Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer von Dolja, Valerian V., Koonin, Eugene V.

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The crAss-like Phage Group: How Metagenomics Reshaped the Human Virome von Koonin, Eugene V., Yutin, Natalya

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Polintons: a hotbed of eukaryotic virus, transposon and plasmid evolution von Krupovic, Mart, Koonin, Eugene V.

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Origins and evolution of viruses of eukaryotes: The ultimate modularity von Koonin, Eugene V, Dolja, Valerian V, Krupovic, Mart

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Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation von Grazziotin, Ana Laura, Koonin, Eugene V, Kristensen, David M

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Global Organization and Proposed Megataxonomy of the Virus World von Koonin, Eugene V, Dolja, Valerian V, Krupovic, Mart, Varsani, Arvind, Wolf, Yuri I, Yutin, Natalya, Zerbini, F Murilo, Kuhn, Jens H

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Expanded microbial genome coverage and improved protein family annotation in the COG database von Galperin, Michael Y, Makarova, Kira S, Wolf, Yuri I, Koonin, Eugene V

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Cellular homologs of the double jelly-roll major capsid proteins clarify the origins of an ancient virus kingdom von Krupovic, Mart, Makarova, Kira S., Koonin, Eugene V.

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Origin and Evolution of the Universal Genetic Code von Koonin, Eugene V, Novozhilov, Artem S

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Deep Roots and Splendid Boughs of the Global Plant Virome von Dolja, Valerian V, Krupovic, Mart, Koonin, Eugene V

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