tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences von Chan, Patricia P., Lowe, Todd M.

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Whole-Genome Annotation with BRAKER von Hoff, Katharina J., Lomsadze, Alexandre, Borodovsky, Mark, Stanke, Mario

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GeMoMa: Homology-Based Gene Prediction Utilizing Intron Position Conservation and RNA-seq Data von Keilwagen, Jens, Hartung, Frank, Grau, Jan

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EuPathDB: The Eukaryotic Pathogen Genomics Database Resource von Warrenfeltz, Susanne, Basenko, Evelina Y., Crouch, Kathryn, Harb, Omar S., Kissinger, Jessica C., Roos, David S., Shanmugasundram, Achchuthan, Silva-Franco, Fatima

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Multi-Genome Annotation with AUGUSTUS von Nachtweide, Stefanie, Stanke, Mario

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BUSCO: Assessing Genome Assembly and Annotation Completeness von Seppey, Mathieu, Manni, Mosè, Zdobnov, Evgeny M.

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Using WormBase ParaSite: An Integrated Platform for Exploring Helminth Genomic Data von Bolt, Bruce J., Rodgers, Faye H., Shafie, Myriam, Kersey, Paul J., Berriman, Matthew, Howe, Kevin L.

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PomBase: The Scientific Resource for Fission Yeast von Lock, Antonia, Rutherford, Kim, Harris, Midori A., Wood, Valerie

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Mouse Genome Informatics (MGI) Is the International Resource for Information on the Laboratory Mouse von Law, MeiYee, Shaw, David R.

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EchinoBase: Tools for Echinoderm Genome Analyses von Cary, Gregory A., Cameron, R. Andrew, Hinman, Veronica F.

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Structural and Functional Annotation of Eukaryotic Genomes with GenSAS von Humann, Jodi L., Lee, Taein, Ficklin, Stephen, Main, Dorrie

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Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database von James-Zorn, Christina, Ponferrada, Virgilio, Fisher, Malcolm E., Burns, Kevin, Fortriede, Joshua, Segerdell, Erik, Karimi, Kamran, Lotay, Vaneet, Wang, Dong Zhuo, Chu, Stanley, Pells, Troy, Wang, Ying, Vize, Peter D., Zorn, Aaron

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Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes von Grove, Christian, Cain, Scott, Chen, Wen J., Davis, Paul, Harris, Todd, Howe, Kevin L., Kishore, Ranjana, Lee, Raymond, Paulini, Michael, Raciti, Daniela, Tuli, Mary Ann, Van Auken, Kimberly, Williams, Gary

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An Introduction to the Saccharomyces Genome Database (SGD) von Lang, Olivia W., Nash, Robert S., Hellerstedt, Sage T., Engel, Stacia R.

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The Ensembl Genome Browser: Strategies for Accessing Eukaryotic Genome Data von Newman, Victoria, Moore, Benjamin, Sparrow, Helen, Perry, Emily

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Generating Publication-Ready Prokaryotic Genome Annotations with DFAST von Tanizawa, Yasuhiro, Fujisawa, Takatomo, Arita, Masanori, Nakamura, Yasukazu

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Using ZFIN: Data Types, Organization, and Retrieval von Van Slyke, Ceri E., Bradford, Yvonne M., Howe, Douglas G., Fashena, David S., Ramachandran, Sridhar, Ruzicka, Leyla

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A Primer for the Rat Genome Database (RGD) von Laulederkind, Stanley J. F., Hayman, G. Thomas, Wang, Shur-Jen, Smith, Jennifer R., Petri, Victoria, Hoffman, Matthew J., De Pons, Jeff, Tutaj, Marek A., Ghiasvand, Omid, Tutaj, Monika, Thota, Jyothi, Dwinell, Melinda R., Shimoyama, Mary

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EuGene: An Automated Integrative Gene Finder for Eukaryotes and Prokaryotes von Sallet, Erika, Gouzy, Jérôme, Schiex, Thomas

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Hymenoptera Genome Database: Using HymenopteraMine to Enhance Genomic Studies of Hymenopteran Insects von Elsik, Christine G., Tayal, Aditi, Unni, Deepak R., Burns, Gregory W., Hagen, Darren E.

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