EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution von Del Campo, Javier, Kolisko, Martin, Boscaro, Vittorio, Santoferrara, Luciana F, Nenarokov, Serafim, Massana, Ramon, Guillou, Laure, Simpson, Alastair, Berney, Cedric, de Vargas, Colomban, Brown, Matthew W, Keeling, Patrick J, Wegener Parfrey, Laura

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Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist von Salas-Leiva, Dayana E., Tromer, Eelco C., Curtis, Bruce A., Jerlström-Hultqvist, Jon, Kolisko, Martin, Yi, Zhenzhen, Salas-Leiva, Joan S., Gallot-Lavallée, Lucie, Williams, Shelby K., Kops, Geert J. P. L., Archibald, John M., Simpson, Alastair G. B., Roger, Andrew J.

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Gregarine single-cell transcriptomics reveals differential mitochondrial remodeling and adaptation in apicomplexans von Salomaki, Eric D., Terpis, Kristina X., Rueckert, Sonja, Kotyk, Michael, Varadinova, Zuzana Kotykova, Cepicka, Ivan, Lane, Christopher E., Kolisko, Martin

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PhyloFisher: A phylogenomic package for resolving eukaryotic relationships von Tice, Alexander K., Zihala, David, Panek, Tomas, Jones, Robert E., Salomaki, Eric D., Nenarokov, Serafim, Burki, Fabien, Elias, Marek, Eme, Laura, Roger, Andrew J., Rokas, Antonis, Shen, Xing-Xing, Strassert, Jurgen F. H., Kolisko, Martin, Brown, Matthew W.

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Functional Relationship between a Dinoflagellate Host and Its Diatom Endosymbiont von Hehenberger, Elisabeth, Burki, Fabien, Kolisko, Martin, Keeling, Patrick J

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Expanded gene and taxon sampling of diplomonads shows multiple switches to parasitic and free-living lifestyle von Wiśniewska, Monika M, Salomaki, Eric D, Silberman, Jeffrey D, Terpis, Kristina X, Mazancová, Eva, Táborský, Petr, Jinatham, Vasana, Gentekaki, Eleni, Čepička, Ivan, Kolisko, Martin

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Author Correction: Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist von Salas-Leiva, Dayana E., Tromer, Eelco C., Curtis, Bruce A., Jerlström-Hultqvist, Jon, Kolisko, Martin, Yi, Zhenzhen, Salas-Leiva, Joan S., Gallot-Lavallée, Lucie, Williams, Shelby K., Kops, Geert J. P. L., Archibald, John M., Simpson, Alastair G. B., Roger, Andrew J.

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There Is Treasure Everywhere: Reductive Plastid Evolution in Apicomplexa in Light of Their Close Relatives von Salomaki, Eric D, Kolisko, Martin

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Characterization of new cristamonad species from kalotermitid termites including a novel genus, Runanympha von Singh, Racquel A., Boscaro, Vittorio, James, Erick R., Karnkowska, Anna, Kolisko, Martin, Gavelis, Gregory S., Okamoto, Noriko, del Campo, Javier, Fiorito, Rebecca, Hehenberger, Elisabeth, Irwin, Nicholas A. T., Mathur, Varsha, Scheffrahn, Rudolf H., Keeling, Patrick J.

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Aggregative Multicellularity Evolved Independently in the Eukaryotic Supergroup Rhizaria von Brown, Matthew W., Kolisko, Martin, Silberman, Jeffrey D., Roger, Andrew J.

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Parallel genome reduction in symbionts descended from closely related free-living bacteria von Boscaro, Vittorio, Kolisko, Martin, Felletti, Michele, Vannini, Claudia, Lynn, Denis H., Keeling, Patrick J.

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Combined morphological and phylogenomic re-examination of malawimonads, a critical taxon for inferring the evolutionary history of eukaryotes von Heiss, Aaron A., Kolisko, Martin, Ekelund, Fleming, Brown, Matthew W., Roger, Andrew J., Simpson, Alastair G. B.

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A Single Tim Translocase in the Mitosomes of Giardia intestinalis Illustrates Convergence of Protein Import Machines in Anaerobic Eukaryotes von Pyrihová, Eva, Motycková, Alžbeta, Voleman, Luboš, Wandyszewska, Natalia, Fišer, Radovan, Seydlová, Gabriela, Roger, Andrew, Kolísko, Martin, Doležal, Pavel

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On the reversibility of parasitism: adaptation to a free-living lifestyle via gene acquisitions in the diplomonad Trepomonas sp. PC1 von Xu, Feifei, Jerlström-Hultqvist, Jon, Kolisko, Martin, Simpson, Alastair G B, Roger, Andrew J, Svärd, Staffan G, Andersson, Jan O

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Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates von Strassert, Jürgen F H, Karnkowska, Anna, Hehenberger, Elisabeth, del Campo, Javier, Kolisko, Martin, Okamoto, Noriko, Burki, Fabien, Janouškovec, Jan, Poirier, Camille, Leonard, Guy, Hallam, Steven J, Richards, Thomas A, Worden, Alexandra Z, Santoro, Alyson E, Keeling, Patrick J

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Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory von Obiol, Aleix, López-Escardó, David, Salomaki, Eric D, Wiśniewska, Monika M, Forn, Irene, Sà, Elisabet, Vaqué, Dolors, Kolísko, Martin, Massana, Ramon

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Releasing uncurated datasets is essential for reproducible phylogenomics von Salomaki, Eric D., Eme, Laura, Brown, Matthew W., Kolisko, Martin

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Diversity, Nomenclature, and Taxonomy of Protists von Adl, Sina M., Leander, Brian S., Simpson, Alastair G. B., Archibald, John M., Anderson, O. Roger, Bass, David, Bowser, Samuel S., Brugerolle, Guy, Farmer, Mark A., Karpov, Sergey, Kolisko, Martin, Lane, Christopher E., Lodge, Deborah J., Mann, David G., Meisterfeld, Ralf, Mendoza, Leonel, Moestrup, Øjvind, Mozley-Standridge, Sharon E., Smirnov, Alexey V., Spiegel, Frederick, Collins, Tim, Sullivan, Jack

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Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes von Leger, Michelle M., Kolisko, Martin, Kamikawa, Ryoma, Stairs, Courtney W., Kume, Keitaro, Čepička, Ivan, Silberman, Jeffrey D., Andersson, Jan O., Xu, Feifei, Yabuki, Akinori, Eme, Laura, Zhang, Qianqian, Takishita, Kiyotaka, Inagaki, Yuji, Simpson, Alastair G. B., Hashimoto, Tetsuo, Roger, Andrew J.

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The evolution of endoparasitism and complex life cycles in parasitic platyhelminths von Brabec, Jan, Salomaki, Eric D., Kolísko, Martin, Scholz, Tomáš, Kuchta, Roman

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